Gene annotation
Transcriptome id Sobic.001G301000.1
Synonym ATEXPB2, Sb01g029280, EXPB2, ATHEXPBETA1.4
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expansin precursor, putative, expressed
UniProt C5WSF3
Pfam PF03330 PF01357
Panther DB PTHR31692 PTHR31692:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65680 : expansin B2
RAP-DB (Rice) LOC_Os10g40700.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051983 , Zm00025a051981 , Zm00025a032217 , Zm00025a051986 , Zm00025a012128 , Zm00025a003339 , Zm00025a003332 , Zm00025a000113 , Zm00025a020874
Brachypodium KQJ97763 , KQJ97762 , KQK24135
Barley HORVU1Hr1G054240.1 , HORVU1Hr1G054240.2 , HORVU0Hr1G005490.1 , HORVU6Hr1G005760.1 , HORVU3Hr1G001920.1 , HORVU3Hr1G001920.3 , HORVU3Hr1G001920.2 , HORVU4Hr1G088140.3 , HORVU4Hr1G088140.2 , HORVU4Hr1G088140.1 , HORVU6Hr1G005810.2 , HORVU6Hr1G005810.3 , HORVU6Hr1G005810.4
Wheat TraesCS4B02G375200 , TraesCS1D02G215500 , TraesCS1D02G215100 , TraesCS1D02G215100 , TraesCS3D02G000500 , TraesCSU02G085500 , TraesCS1A02G212000 , TraesCSU02G216000 , TraesCS1A02G212400 , TraesCS3A02G011100 , TraesCS1D02G215400 , TraesCS5A02G538000 , TraesCS6B02G046400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G231800 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
2 Sobic.008G010500 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.004G121600 expansin precursor, putative, expressed -
4 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
5 Sobic.005G119900 reticuline oxidase-like protein precursor, putative, expressed -
6 Sobic.003G053200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.010G268700 expansin precursor, putative, expressed -
8 Sobic.010G245400 peroxidase precursor, putative, expressed K00430: peroxidase
9 Sobic.006G097900 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
10 Sobic.005G206000 dirigent, putative, expressed -
11 Sobic.003G357700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Laccase LAC7 (At)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
12 Sobic.003G441800 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
13 Sobic.001G181600 dehydrogenase/reductase, putative, expressed -
14 Sobic.007G037600 C4-dicarboxylate transporter/malic acid transport protein, expressed -
15 Sobic.004G121800 expansin precursor, putative, expressed -
16 Sobic.004G029400 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
17 Sobic.005G216600 plant protein of unknown function domain containing protein, expressed -
18 Sobic.010G031700 thaumatin, putative, expressed -
19 Sobic.007G212000 receptor-like protein kinase precursor, putative, expressed -
20 Sobic.007G186500 resistance protein, putative, expressed -


Gene co-expression network
sample Sobic001G301000 Sobic001G301000 Sobic001G231800 Sobic001G231800 Sobic001G301000--Sobic001G231800 Sobic008G010500 Sobic008G010500 Sobic001G301000--Sobic008G010500 Sobic004G121600 Sobic004G121600 Sobic001G301000--Sobic004G121600 Sobic003G441700 Sobic003G441700 Sobic001G301000--Sobic003G441700 Sobic005G119900 Sobic005G119900 Sobic001G301000--Sobic005G119900 Sobic003G053200 Sobic003G053200 Sobic001G301000--Sobic003G053200 Sobic010G268700 Sobic010G268700 Sobic001G301000--Sobic010G268700 Sobic010G245400 Sobic010G245400 Sobic001G301000--Sobic010G245400 Sobic006G097900 Sobic006G097900 Sobic001G301000--Sobic006G097900 Sobic001G231800--Sobic001G301000 Sobic001G231800--Sobic008G010500 Sobic001G231800--Sobic010G245400 Sobic001G231800--Sobic005G119900 Sobic001G231800--Sobic003G441700 Sobic001G231800--Sobic004G121600 Sobic001G231800--Sobic003G053200 Sobic001G231800--Sobic010G268700 Sobic003G357700 Sobic003G357700 Sobic001G231800--Sobic003G357700 Sobic008G010500--Sobic001G301000 Sobic008G010500--Sobic001G231800 Sobic008G010500--Sobic004G121600 Sobic008G010500--Sobic010G268700 Sobic008G010500--Sobic005G119900 Sobic005G206000 Sobic005G206000 Sobic008G010500--Sobic005G206000 Sobic008G010500--Sobic003G441700 Sobic008G010500--Sobic010G245400 Sobic008G010500--Sobic003G053200 Sobic004G121600--Sobic003G441700 Sobic004G121600--Sobic001G301000 Sobic004G121600--Sobic006G097900 Sobic004G121600--Sobic005G119900 Sobic004G121600--Sobic003G053200 Sobic003G441800 Sobic003G441800 Sobic004G121600--Sobic003G441800 Sobic004G121600--Sobic008G010500 Sobic001G218400 Sobic001G218400 Sobic004G121600--Sobic001G218400 Sobic004G121800 Sobic004G121800 Sobic004G121600--Sobic004G121800 Sobic003G441700--Sobic005G119900 Sobic003G441700--Sobic003G053200 Sobic003G441700--Sobic003G441800 Sobic003G441700--Sobic004G121600 Sobic003G441700--Sobic001G301000 Sobic009G055300 Sobic009G055300 Sobic003G441700--Sobic009G055300 Sobic001G181600 Sobic001G181600 Sobic003G441700--Sobic001G181600 Sobic003G441700--Sobic006G097900 Sobic003G441700--Sobic001G231800 Sobic005G119900--Sobic003G441700 Sobic005G119900--Sobic001G301000 Sobic005G119900--Sobic001G181600 Sobic005G119900--Sobic004G121600 Sobic005G119900--Sobic003G441800 Sobic005G119900--Sobic003G053200 Sobic003G154500 Sobic003G154500 Sobic005G119900--Sobic003G154500 Sobic005G119900--Sobic009G055300 Sobic005G119900--Sobic001G231800 Sobic003G053200--Sobic003G441800 Sobic003G053200--Sobic003G441700 Sobic003G053200--Sobic001G301000 Sobic003G053200--Sobic004G121600 Sobic010G031700 Sobic010G031700 Sobic003G053200--Sobic010G031700 Sobic003G053200--Sobic005G119900 Sobic004G029400 Sobic004G029400 Sobic003G053200--Sobic004G029400 Sobic003G053200--Sobic001G231800 Sobic007G037600 Sobic007G037600 Sobic003G053200--Sobic007G037600 Sobic010G268700--Sobic006G097900 Sobic005G060200 Sobic005G060200 Sobic010G268700--Sobic005G060200 Sobic010G268700--Sobic001G301000 Sobic005G216600 Sobic005G216600 Sobic010G268700--Sobic005G216600 Sobic001G293100 Sobic001G293100 Sobic010G268700--Sobic001G293100 Sobic005G197500 Sobic005G197500 Sobic010G268700--Sobic005G197500 Sobic010G268700--Sobic008G010500 Sobic004G002901 Sobic004G002901 Sobic010G268700--Sobic004G002901 Sobic003G161400 Sobic003G161400 Sobic010G268700--Sobic003G161400 Sobic010G245400--Sobic001G231800 Sobic010G245400--Sobic001G301000 Sobic005G216400 Sobic005G216400 Sobic010G245400--Sobic005G216400 Sobic010G245400--Sobic010G268700 Sobic010G245400--Sobic005G119900 Sobic010G245400--Sobic005G060200 Sobic007G212000 Sobic007G212000 Sobic010G245400--Sobic007G212000 Sobic010G245400--Sobic003G357700 Sobic010G245400--Sobic008G010500 Sobic006G097900--Sobic004G121600 Sobic006G097900--Sobic010G268700 Sobic006G097900--Sobic003G441700 Sobic006G097900--Sobic001G181600 Sobic006G097900--Sobic001G218400 Sobic006G097900--Sobic005G216600 Sobic006G097900--Sobic001G293100 Sobic006G097900--Sobic003G441800 Sobic006G097900--Sobic005G119900
Octagon: transcription factors


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