Gene annotation
Transcriptome id Sobic.003G357700.1,Sobic.003G357700.2
Synonym Sb03g039980, LAC7
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
Laccase LAC7 (At) (PubMedID : 27208977)
laccase precursor protein, putative, expressed
UniProt C5XPU4 , A0A1W0W0F4
Pfam PF07732 PF00394 PF07731
Panther DB PTHR11709 PTHR11709:SF9
NCBI CDD KOG1263; Multicopper oxidases
KEGG Orthology K05909; laccase
Gene Ontology GO:0005507; copper ion binding GO:0016491oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT3G09220 : laccase 7
RAP-DB (Rice) LOC_Os01g63200.1 : laccase precursor protein, putative, expressed
MaizeGDB (Corn) Zm00025a022105 , Zm00025a029611 , Zm00025a039744 , Zm00025a026840 , Zm00025a023909 , Zm00025a002044 , Zm00025a027016 , Zm00025a026839
Brachypodium KQK10593 , KQJ93028 , KQK10391 , PNT63129 , PNT73208 , PNT73209 , KQJ87547 , PNT73210 , PNT63130
Barley HORVU1Hr1G008360.8 , HORVU1Hr1G008360.9 , HORVU1Hr1G008360.2 , HORVU1Hr1G008360.3 , HORVU1Hr1G008360.1 , HORVU1Hr1G008360.6 , HORVU1Hr1G008360.7 , HORVU1Hr1G008360.4 , HORVU1Hr1G008360.5 , HORVU5Hr1G047480.10 , HORVU3Hr1G085520.5 , HORVU3Hr1G085520.4 , HORVU3Hr1G085520.7 , HORVU3Hr1G085520.6 , HORVU3Hr1G085520.1 , HORVU3Hr1G085520.3 , HORVU3Hr1G085520.2 , HORVU3Hr1G085520.9 , HORVU3Hr1G085520.8 , HORVU5Hr1G047480.6 , HORVU5Hr1G047480.7 , HORVU5Hr1G047480.3 , HORVU5Hr1G047480.9
Wheat TraesCS5D02G156500 , TraesCS1B02G394300 , TraesCS3D02G358600 , TraesCS3B02G397300 , TraesCS3A02G365500 , TraesCS3D02G358500 , TraesCS5A02G151400 , TraesCS6A02G304900 , TraesCS3A02G365300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G216400 plant protein of unknown function domain containing protein, expressed -
2 Sobic.003G443700 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
3 Sobic.004G346300 expressed protein -
4 Sobic.007G177400 OsFBX306 - F-box domain containing protein, expressed -
5 Sobic.005G119900 reticuline oxidase-like protein precursor, putative, expressed -
6 Sobic.002G366200 NAD dependent epimerase/dehydratase family protein, putative, expressed -
7 Sobic.007G212000 receptor-like protein kinase precursor, putative, expressed -
8 Sobic.002G178101 - -
9 Sobic.008G105800 cytochrome P450, putative, expressed -
10 Sobic.005G060200 cytochrome P450, putative, expressed -
11 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
12 Sobic.001G231800 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
13 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
14 Sobic.002G028632 - -
15 Sobic.010G245400 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.001G181600 dehydrogenase/reductase, putative, expressed -
17 Sobic.002G025500 expressed protein -
18 Sobic.010G268700 expansin precursor, putative, expressed -
19 Sobic.006G121000 purine permease, putative, expressed -
20 Sobic.008G010500 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic003G357700 Sobic003G357700 Sobic005G216400 Sobic005G216400 Sobic003G357700--Sobic005G216400 Sobic003G443700 Sobic003G443700 Sobic003G357700--Sobic003G443700 Sobic004G346300 Sobic004G346300 Sobic003G357700--Sobic004G346300 Sobic007G177400 Sobic007G177400 Sobic003G357700--Sobic007G177400 Sobic005G119900 Sobic005G119900 Sobic003G357700--Sobic005G119900 Sobic002G366200 Sobic002G366200 Sobic003G357700--Sobic002G366200 Sobic007G212000 Sobic007G212000 Sobic003G357700--Sobic007G212000 Sobic002G178101 Sobic002G178101 Sobic003G357700--Sobic002G178101 Sobic008G105800 Sobic008G105800 Sobic003G357700--Sobic008G105800 Sobic005G216400--Sobic003G357700 Sobic005G216400--Sobic002G178101 Sobic005G216400--Sobic008G105800 Sobic006G121000 Sobic006G121000 Sobic005G216400--Sobic006G121000 Sobic005G216400--Sobic007G212000 Sobic005G060200 Sobic005G060200 Sobic005G216400--Sobic005G060200 Sobic005G216400--Sobic003G443700 Sobic002G178200 Sobic002G178200 Sobic005G216400--Sobic002G178200 Sobic005G216400--Sobic004G346300 Sobic003G443700--Sobic003G357700 Sobic003G443700--Sobic004G346300 Sobic003G443700--Sobic005G216400 Sobic003G443700--Sobic002G178101 Sobic003G443700--Sobic005G060200 Sobic002G025500 Sobic002G025500 Sobic003G443700--Sobic002G025500 Sobic003G443700--Sobic007G177400 Sobic003G443700--Sobic006G121000 Sobic002G028632 Sobic002G028632 Sobic003G443700--Sobic002G028632 Sobic004G346300--Sobic003G443700 Sobic004G346300--Sobic003G357700 Sobic004G346300--Sobic005G216400 Sobic004G346300--Sobic005G060200 Sobic004G346300--Sobic007G177400 Sobic004G002901 Sobic004G002901 Sobic004G346300--Sobic004G002901 Sobic004G346300--Sobic007G212000 Sobic003G023600 Sobic003G023600 Sobic004G346300--Sobic003G023600 Sobic004G346300--Sobic002G025500 Sobic007G177400--Sobic003G357700 Sobic007G177400--Sobic002G366200 Sobic007G177400--Sobic004G346300 Sobic007G177400--Sobic003G443700 Sobic007G064500 Sobic007G064500 Sobic007G177400--Sobic007G064500 Sobic007G177400--Sobic002G028632 Sobic007G177400--Sobic005G216400 Sobic007G177400--Sobic003G023600 Sobic007G177400--Sobic002G025500 Sobic003G441700 Sobic003G441700 Sobic005G119900--Sobic003G441700 Sobic001G301000 Sobic001G301000 Sobic005G119900--Sobic001G301000 Sobic001G181600 Sobic001G181600 Sobic005G119900--Sobic001G181600 Sobic004G121600 Sobic004G121600 Sobic005G119900--Sobic004G121600 Sobic003G441800 Sobic003G441800 Sobic005G119900--Sobic003G441800 Sobic003G053200 Sobic003G053200 Sobic005G119900--Sobic003G053200 Sobic003G154500 Sobic003G154500 Sobic005G119900--Sobic003G154500 Sobic009G055300 Sobic009G055300 Sobic005G119900--Sobic009G055300 Sobic001G231800 Sobic001G231800 Sobic005G119900--Sobic001G231800 Sobic002G366200--Sobic002G028632 Sobic002G366200--Sobic003G357700 Sobic002G366200--Sobic007G177400 Sobic002G366200--Sobic003G443700 Sobic002G366200--Sobic002G025500 Sobic002G366200--Sobic007G064500 Sobic008G010500 Sobic008G010500 Sobic002G366200--Sobic008G010500 Sobic002G366200--Sobic005G216400 Sobic002G366200--Sobic005G119900 Sobic007G015000 Sobic007G015000 Sobic007G212000--Sobic007G015000 Sobic006G230100 Sobic006G230100 Sobic007G212000--Sobic006G230100 Sobic007G212000--Sobic008G105800 Sobic007G212000--Sobic005G216400 Sobic007G212000--Sobic006G121000 Sobic007G202480 Sobic007G202480 Sobic007G212000--Sobic007G202480 Sobic004G299500 Sobic004G299500 Sobic007G212000--Sobic004G299500 Sobic007G212000--Sobic005G060200 Sobic007G212000--Sobic001G181600 Sobic005G220300 Sobic005G220300 Sobic002G178101--Sobic005G220300 Sobic002G178101--Sobic005G216400 Sobic002G178101--Sobic006G121000 Sobic002G178101--Sobic002G178200 Sobic002G178101--Sobic003G443700 Sobic002G178101--Sobic005G060200 Sobic002G178101--Sobic003G357700 Sobic002G178000 Sobic002G178000 Sobic002G178101--Sobic002G178000 Sobic005G162400 Sobic005G162400 Sobic002G178101--Sobic005G162400 Sobic008G105800--Sobic009G055300 Sobic005G069332 Sobic005G069332 Sobic008G105800--Sobic005G069332 Sobic005G069166 Sobic005G069166 Sobic008G105800--Sobic005G069166 Sobic008G105800--Sobic007G202480 Sobic008G105800--Sobic006G230100 Sobic008G105800--Sobic005G216400 Sobic008G105800--Sobic006G121000 Sobic008G105800--Sobic004G299500 Sobic006G230200 Sobic006G230200 Sobic008G105800--Sobic006G230200
Octagon: transcription factors


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