Gene annotation
Transcriptome id Sobic.004G121800.1
Synonym ATEXPA11, ATEXP11, ATHEXPALPHA1.14, Sb04g010160, EXP11, EXPA11
Functional annotation expansin precursor, putative, expressed
UniProt C5XZP1
Pfam PF03330 PF01357
Panther DB PTHR31867 PTHR31867:SF19
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G20190 : expansin 11
RAP-DB (Rice) LOC_Os02g16809.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a019879 , Zm00025a019850 , Zm00025a019851 , Zm00025a019852 , Zm00025a019856 , Zm00025a019849 , Zm00025a055602
Brachypodium PNT66309
Barley -
Wheat TraesCS4B02G271200 , TraesCS3A02G160100 , TraesCS4D02G270400 , TraesCS3A02G160000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G121600 expansin precursor, putative, expressed -
2 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
3 Sobic.003G053200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.001G272800 NBS-LRR disease resistance protein, putative, expressed -
5 Sobic.008G010500 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.003G441800 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
7 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
8 Sobic.001G231800 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
9 Sobic.009G055300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.005G119900 reticuline oxidase-like protein precursor, putative, expressed -
11 Sobic.008G105800 cytochrome P450, putative, expressed -
12 Sobic.006G097900 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
13 Sobic.003G161400 powdery mildew resistance protein PM3A, putative, expressed -
14 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
15 Sobic.010G268700 expansin precursor, putative, expressed -
16 Sobic.001G415100 terpene synthase, putative, expressed -
17 Sobic.001G181600 dehydrogenase/reductase, putative, expressed -
18 Sobic.010G010000 plant protein of unknown function domain containing protein, expressed -
19 Sobic.007G186500 resistance protein, putative, expressed -
20 Sobic.005G046400 - -


Gene co-expression network
sample Sobic004G121800 Sobic004G121800 Sobic004G121600 Sobic004G121600 Sobic004G121800--Sobic004G121600 Sobic003G441700 Sobic003G441700 Sobic004G121800--Sobic003G441700 Sobic003G053200 Sobic003G053200 Sobic004G121800--Sobic003G053200 Sobic001G272800 Sobic001G272800 Sobic004G121800--Sobic001G272800 Sobic008G010500 Sobic008G010500 Sobic004G121800--Sobic008G010500 Sobic003G441800 Sobic003G441800 Sobic004G121800--Sobic003G441800 Sobic001G301000 Sobic001G301000 Sobic004G121800--Sobic001G301000 Sobic001G231800 Sobic001G231800 Sobic004G121800--Sobic001G231800 Sobic009G055300 Sobic009G055300 Sobic004G121800--Sobic009G055300 Sobic004G121600--Sobic003G441700 Sobic004G121600--Sobic001G301000 Sobic006G097900 Sobic006G097900 Sobic004G121600--Sobic006G097900 Sobic005G119900 Sobic005G119900 Sobic004G121600--Sobic005G119900 Sobic004G121600--Sobic003G053200 Sobic004G121600--Sobic003G441800 Sobic004G121600--Sobic008G010500 Sobic001G218400 Sobic001G218400 Sobic004G121600--Sobic001G218400 Sobic004G121600--Sobic004G121800 Sobic003G441700--Sobic005G119900 Sobic003G441700--Sobic003G053200 Sobic003G441700--Sobic003G441800 Sobic003G441700--Sobic004G121600 Sobic003G441700--Sobic001G301000 Sobic003G441700--Sobic009G055300 Sobic001G181600 Sobic001G181600 Sobic003G441700--Sobic001G181600 Sobic003G441700--Sobic006G097900 Sobic003G441700--Sobic001G231800 Sobic003G053200--Sobic003G441800 Sobic003G053200--Sobic003G441700 Sobic003G053200--Sobic001G301000 Sobic003G053200--Sobic004G121600 Sobic010G031700 Sobic010G031700 Sobic003G053200--Sobic010G031700 Sobic003G053200--Sobic005G119900 Sobic004G029400 Sobic004G029400 Sobic003G053200--Sobic004G029400 Sobic003G053200--Sobic001G231800 Sobic007G037600 Sobic007G037600 Sobic003G053200--Sobic007G037600 Sobic001G415100 Sobic001G415100 Sobic001G272800--Sobic001G415100 Sobic001G272800--Sobic009G055300 Sobic001G272800--Sobic004G121600 Sobic002G289500 Sobic002G289500 Sobic001G272800--Sobic002G289500 Sobic009G136800 Sobic009G136800 Sobic001G272800--Sobic009G136800 Sobic006G230100 Sobic006G230100 Sobic001G272800--Sobic006G230100 Sobic002G063700 Sobic002G063700 Sobic001G272800--Sobic002G063700 Sobic001G153100 Sobic001G153100 Sobic001G272800--Sobic001G153100 Sobic009G165100 Sobic009G165100 Sobic001G272800--Sobic009G165100 Sobic008G010500--Sobic001G301000 Sobic008G010500--Sobic001G231800 Sobic008G010500--Sobic004G121600 Sobic010G268700 Sobic010G268700 Sobic008G010500--Sobic010G268700 Sobic008G010500--Sobic005G119900 Sobic005G206000 Sobic005G206000 Sobic008G010500--Sobic005G206000 Sobic008G010500--Sobic003G441700 Sobic010G245400 Sobic010G245400 Sobic008G010500--Sobic010G245400 Sobic008G010500--Sobic003G053200 Sobic003G441800--Sobic003G053200 Sobic003G441800--Sobic003G441700 Sobic003G441601 Sobic003G441601 Sobic003G441800--Sobic003G441601 Sobic005G046400 Sobic005G046400 Sobic003G441800--Sobic005G046400 Sobic006G205700 Sobic006G205700 Sobic003G441800--Sobic006G205700 Sobic003G441800--Sobic004G121600 Sobic003G441800--Sobic005G119900 Sobic003G441800--Sobic007G037600 Sobic009G065700 Sobic009G065700 Sobic003G441800--Sobic009G065700 Sobic001G301000--Sobic001G231800 Sobic001G301000--Sobic008G010500 Sobic001G301000--Sobic004G121600 Sobic001G301000--Sobic003G441700 Sobic001G301000--Sobic005G119900 Sobic001G301000--Sobic003G053200 Sobic001G301000--Sobic010G268700 Sobic001G301000--Sobic010G245400 Sobic001G301000--Sobic006G097900 Sobic001G231800--Sobic001G301000 Sobic001G231800--Sobic008G010500 Sobic001G231800--Sobic010G245400 Sobic001G231800--Sobic005G119900 Sobic001G231800--Sobic003G441700 Sobic001G231800--Sobic004G121600 Sobic001G231800--Sobic003G053200 Sobic001G231800--Sobic010G268700 Sobic003G357700 Sobic003G357700 Sobic001G231800--Sobic003G357700 Sobic006G230200 Sobic006G230200 Sobic009G055300--Sobic006G230200 Sobic009G055300--Sobic006G230100 Sobic008G105800 Sobic008G105800 Sobic009G055300--Sobic008G105800 Sobic009G055300--Sobic002G063700 Sobic009G055300--Sobic001G415100 Sobic007G202480 Sobic007G202480 Sobic009G055300--Sobic007G202480 Sobic004G299500 Sobic004G299500 Sobic009G055300--Sobic004G299500 Sobic005G069332 Sobic005G069332 Sobic009G055300--Sobic005G069332 Sobic005G069166 Sobic005G069166 Sobic009G055300--Sobic005G069166
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.