Gene annotation
Transcriptome id Sobic.003G154500.1
Synonym
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt A0A1B6Q3D2
Pfam -
Panther DB PTHR33124 PTHR33124:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G47270 : sequence-specific DNA binding transcription factors;transcription regulators
RAP-DB (Rice) LOC_Os05g06520.1 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036216
Brachypodium -
Barley HORVU1Hr1G023330.1
Wheat TraesCS1D02G108600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G181600 dehydrogenase/reductase, putative, expressed -
2 Sobic.005G119900 reticuline oxidase-like protein precursor, putative, expressed -
3 Sobic.001G395900 Nicotianamine synthase 4("PubMedID : 26759170,PubMedID : 24597475")@nicotianamine synthase, putative, expressed K05953: nicotianamine synthase
4 Sobic.006G230200 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
5 Sobic.007G202480 - -
6 Sobic.009G055300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
7 Sobic.006G230100 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
8 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
9 Sobic.004G261500 phosphoribosyl transferase, putative, expressed -
10 Sobic.007G212000 receptor-like protein kinase precursor, putative, expressed -
11 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
12 Sobic.004G299500 - -
13 Sobic.005G101000 - -
14 Sobic.001G153100 sulfate transporter, putative, expressed K17470: sulfate transporter 1, high-affinity
15 Sobic.006G097900 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
16 Sobic.006G229901 - -
17 Sobic.008G105800 cytochrome P450, putative, expressed -
18 Sobic.003G441800 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
19 Sobic.004G121600 expansin precursor, putative, expressed -
20 Sobic.007G015000 methyltransferase domain containing protein, expressed -


Gene co-expression network
sample Sobic003G154500 Sobic003G154500 Sobic001G181600 Sobic001G181600 Sobic003G154500--Sobic001G181600 Sobic005G119900 Sobic005G119900 Sobic003G154500--Sobic005G119900 Sobic001G395900 Sobic001G395900 Sobic003G154500--Sobic001G395900 Sobic006G230200 Sobic006G230200 Sobic003G154500--Sobic006G230200 Sobic007G202480 Sobic007G202480 Sobic003G154500--Sobic007G202480 Sobic009G055300 Sobic009G055300 Sobic003G154500--Sobic009G055300 Sobic006G230100 Sobic006G230100 Sobic003G154500--Sobic006G230100 Sobic001G218400 Sobic001G218400 Sobic003G154500--Sobic001G218400 Sobic004G261500 Sobic004G261500 Sobic003G154500--Sobic004G261500 Sobic001G181600--Sobic003G154500 Sobic001G181600--Sobic005G119900 Sobic003G441700 Sobic003G441700 Sobic001G181600--Sobic003G441700 Sobic006G097900 Sobic006G097900 Sobic001G181600--Sobic006G097900 Sobic001G181600--Sobic001G218400 Sobic001G181600--Sobic009G055300 Sobic007G212000 Sobic007G212000 Sobic001G181600--Sobic007G212000 Sobic001G181600--Sobic007G202480 Sobic007G015000 Sobic007G015000 Sobic001G181600--Sobic007G015000 Sobic005G119900--Sobic003G441700 Sobic001G301000 Sobic001G301000 Sobic005G119900--Sobic001G301000 Sobic005G119900--Sobic001G181600 Sobic004G121600 Sobic004G121600 Sobic005G119900--Sobic004G121600 Sobic003G441800 Sobic003G441800 Sobic005G119900--Sobic003G441800 Sobic003G053200 Sobic003G053200 Sobic005G119900--Sobic003G053200 Sobic005G119900--Sobic003G154500 Sobic005G119900--Sobic009G055300 Sobic001G231800 Sobic001G231800 Sobic005G119900--Sobic001G231800 Sobic001G395900--Sobic007G202480 Sobic004G299500 Sobic004G299500 Sobic001G395900--Sobic004G299500 Sobic005G101000 Sobic005G101000 Sobic001G395900--Sobic005G101000 Sobic001G395900--Sobic006G230100 Sobic001G395900--Sobic006G230200 Sobic008G058600 Sobic008G058600 Sobic001G395900--Sobic008G058600 Sobic006G229901 Sobic006G229901 Sobic001G395900--Sobic006G229901 Sobic001G395900--Sobic004G261500 Sobic005G069166 Sobic005G069166 Sobic001G395900--Sobic005G069166 Sobic006G230200--Sobic009G055300 Sobic006G230200--Sobic001G395900 Sobic006G230200--Sobic006G230100 Sobic006G230200--Sobic007G202480 Sobic006G230200--Sobic004G299500 Sobic005G069332 Sobic005G069332 Sobic006G230200--Sobic005G069332 Sobic008G105800 Sobic008G105800 Sobic006G230200--Sobic008G105800 Sobic001G153100 Sobic001G153100 Sobic006G230200--Sobic001G153100 Sobic006G230200--Sobic005G069166 Sobic007G202480--Sobic001G395900 Sobic007G202480--Sobic006G229901 Sobic007G202480--Sobic004G299500 Sobic007G202480--Sobic006G230100 Sobic007G202480--Sobic005G069166 Sobic007G202480--Sobic001G153100 Sobic007G202480--Sobic006G230200 Sobic007G202480--Sobic005G069332 Sobic007G202480--Sobic008G105800 Sobic009G055300--Sobic006G230200 Sobic009G055300--Sobic006G230100 Sobic009G055300--Sobic008G105800 Sobic002G063700 Sobic002G063700 Sobic009G055300--Sobic002G063700 Sobic001G415100 Sobic001G415100 Sobic009G055300--Sobic001G415100 Sobic009G055300--Sobic007G202480 Sobic009G055300--Sobic004G299500 Sobic009G055300--Sobic005G069332 Sobic009G055300--Sobic005G069166 Sobic006G230100--Sobic004G299500 Sobic006G230100--Sobic001G395900 Sobic006G230100--Sobic007G202480 Sobic006G230100--Sobic007G015000 Sobic006G230100--Sobic005G069166 Sobic006G230100--Sobic009G055300 Sobic006G230100--Sobic006G230200 Sobic006G230100--Sobic001G153100 Sobic006G230100--Sobic006G229901 Sobic001G218400--Sobic006G097900 Sobic001G218400--Sobic004G121600 Sobic001G218400--Sobic001G181600 Sobic001G218400--Sobic003G441800 Sobic010G191600 Sobic010G191600 Sobic001G218400--Sobic010G191600 Sobic001G218400--Sobic003G154500 Sobic001G218400--Sobic003G441700 Sobic010G010000 Sobic010G010000 Sobic001G218400--Sobic010G010000 Sobic001G218400--Sobic005G119900 Sobic004G261500--Sobic001G395900 Sobic004G261500--Sobic005G101000 Sobic004G261500--Sobic006G230100 Sobic004G261500--Sobic004G299500 Sobic004G261500--Sobic008G058600 Sobic004G261500--Sobic007G202480 Sobic004G261500--Sobic006G230200 Sobic004G261500--Sobic001G153100 Sobic004G261500--Sobic003G154500
Octagon: transcription factors


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