Gene annotation
Transcriptome id Sobic.004G299500.1
Synonym YSL3, Sb04g033320, ATYSL3
Functional annotation -
UniProt C5XS27
Pfam PF03169
Panther DB PTHR31645 PTHR31645:SF17
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G53550 : YELLOW STRIPE like 3
RAP-DB (Rice) LOC_Os02g43410.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a020926 , Zm00025a056642
Brachypodium KQK00558 , KQK00557
Barley HORVU7Hr1G097350.1 , HORVU7Hr1G097350.2 , HORVU7Hr1G097350.4 , HORVU7Hr1G097350.7 , HORVU6Hr1G045460.1 , HORVU7Hr1G097350.10 , HORVU7Hr1G097350.6 , HORVU7Hr1G097350.9 , HORVU7Hr1G097350.8 , HORVU6Hr1G061450.2 , HORVU6Hr1G061450.3 , HORVU6Hr1G061450.1 , HORVU6Hr1G061450.4 , HORVU6Hr1G061450.5
Wheat TraesCS7A02G420700 , TraesCS6A02G240900 , TraesCS7A02G420300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G230100 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
2 Sobic.001G395900 Nicotianamine synthase 4("PubMedID : 26759170,PubMedID : 24597475")@nicotianamine synthase, putative, expressed K05953: nicotianamine synthase
3 Sobic.007G202480 - -
4 Sobic.005G069166 - -
5 Sobic.006G229901 - -
6 Sobic.007G015000 methyltransferase domain containing protein, expressed -
7 Sobic.005G069332 - -
8 Sobic.001G153100 sulfate transporter, putative, expressed K17470: sulfate transporter 1, high-affinity
9 Sobic.008G058600 protein kinase family protein, putative, expressed -
10 Sobic.006G230200 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
11 Sobic.009G055300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.005G101000 - -
13 Sobic.001G415100 terpene synthase, putative, expressed -
14 Sobic.006G121000 purine permease, putative, expressed -
15 Sobic.008G105800 cytochrome P450, putative, expressed -
16 Sobic.003G045650 - -
17 Sobic.007G212000 receptor-like protein kinase precursor, putative, expressed -
18 Sobic.004G261500 phosphoribosyl transferase, putative, expressed -
19 Sobic.002G063700 NB-ARC domain containing protein, expressed -
20 Sobic.001G234100 expressed protein -


Gene co-expression network
sample Sobic004G299500 Sobic004G299500 Sobic006G230100 Sobic006G230100 Sobic004G299500--Sobic006G230100 Sobic001G395900 Sobic001G395900 Sobic004G299500--Sobic001G395900 Sobic007G202480 Sobic007G202480 Sobic004G299500--Sobic007G202480 Sobic005G069166 Sobic005G069166 Sobic004G299500--Sobic005G069166 Sobic006G229901 Sobic006G229901 Sobic004G299500--Sobic006G229901 Sobic007G015000 Sobic007G015000 Sobic004G299500--Sobic007G015000 Sobic005G069332 Sobic005G069332 Sobic004G299500--Sobic005G069332 Sobic001G153100 Sobic001G153100 Sobic004G299500--Sobic001G153100 Sobic008G058600 Sobic008G058600 Sobic004G299500--Sobic008G058600 Sobic006G230100--Sobic004G299500 Sobic006G230100--Sobic001G395900 Sobic006G230100--Sobic007G202480 Sobic006G230100--Sobic007G015000 Sobic006G230100--Sobic005G069166 Sobic009G055300 Sobic009G055300 Sobic006G230100--Sobic009G055300 Sobic006G230200 Sobic006G230200 Sobic006G230100--Sobic006G230200 Sobic006G230100--Sobic001G153100 Sobic006G230100--Sobic006G229901 Sobic001G395900--Sobic007G202480 Sobic001G395900--Sobic004G299500 Sobic005G101000 Sobic005G101000 Sobic001G395900--Sobic005G101000 Sobic001G395900--Sobic006G230100 Sobic001G395900--Sobic006G230200 Sobic001G395900--Sobic008G058600 Sobic001G395900--Sobic006G229901 Sobic004G261500 Sobic004G261500 Sobic001G395900--Sobic004G261500 Sobic001G395900--Sobic005G069166 Sobic007G202480--Sobic001G395900 Sobic007G202480--Sobic006G229901 Sobic007G202480--Sobic004G299500 Sobic007G202480--Sobic006G230100 Sobic007G202480--Sobic005G069166 Sobic007G202480--Sobic001G153100 Sobic007G202480--Sobic006G230200 Sobic007G202480--Sobic005G069332 Sobic008G105800 Sobic008G105800 Sobic007G202480--Sobic008G105800 Sobic005G069166--Sobic004G299500 Sobic005G069166--Sobic005G069332 Sobic005G069166--Sobic006G230100 Sobic005G069166--Sobic007G202480 Sobic005G069166--Sobic001G153100 Sobic005G069166--Sobic006G229901 Sobic005G069166--Sobic008G105800 Sobic005G069166--Sobic001G395900 Sobic005G069166--Sobic007G015000 Sobic006G229901--Sobic007G202480 Sobic006G229901--Sobic004G299500 Sobic003G045650 Sobic003G045650 Sobic006G229901--Sobic003G045650 Sobic006G229901--Sobic001G395900 Sobic006G229901--Sobic006G230100 Sobic006G229901--Sobic001G153100 Sobic006G229901--Sobic005G069166 Sobic006G229901--Sobic008G058600 Sobic006G229901--Sobic005G069332 Sobic007G015000--Sobic006G230100 Sobic007G015000--Sobic004G299500 Sobic001G293100 Sobic001G293100 Sobic007G015000--Sobic001G293100 Sobic001G415100 Sobic001G415100 Sobic007G015000--Sobic001G415100 Sobic007G212000 Sobic007G212000 Sobic007G015000--Sobic007G212000 Sobic005G097900 Sobic005G097900 Sobic007G015000--Sobic005G097900 Sobic007G015000--Sobic005G069166 Sobic007G015000--Sobic007G202480 Sobic007G015000--Sobic008G105800 Sobic005G069332--Sobic005G069166 Sobic005G069332--Sobic004G299500 Sobic005G069332--Sobic008G105800 Sobic005G069332--Sobic006G230100 Sobic005G069332--Sobic007G202480 Sobic002G063700 Sobic002G063700 Sobic005G069332--Sobic002G063700 Sobic005G069332--Sobic009G055300 Sobic005G069332--Sobic001G395900 Sobic005G069332--Sobic006G230200 Sobic001G153100--Sobic007G202480 Sobic001G153100--Sobic005G069166 Sobic001G153100--Sobic006G230100 Sobic001G153100--Sobic004G299500 Sobic001G153100--Sobic006G229901 Sobic001G153100--Sobic002G063700 Sobic001G153100--Sobic001G395900 Sobic001G153100--Sobic001G415100 Sobic002G289500 Sobic002G289500 Sobic001G153100--Sobic002G289500 Sobic008G058600--Sobic005G101000 Sobic008G058600--Sobic003G045650 Sobic008G058600--Sobic001G395900 Sobic008G058600--Sobic004G299500 Sobic001G234100 Sobic001G234100 Sobic008G058600--Sobic001G234100 Sobic005G176600 Sobic005G176600 Sobic008G058600--Sobic005G176600 Sobic008G058600--Sobic007G202480 Sobic008G058600--Sobic006G230100 Sobic008G058600--Sobic006G229901
Octagon: transcription factors


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