Gene annotation
Transcriptome id Sobic.001G218500.1,Sobic.001G218500.2
Synonym
Functional annotation MATH domain containing protein, expressed
UniProt A0A1B6QK75 , A0A1B6QK69
Pfam PF00917
Panther DB -
NCBI CDD KOG1987; Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G17380 : TRAF-like family protein
RAP-DB (Rice) LOC_Os10g33830.1 : MATH domain containing protein, expressed
MaizeGDB (Corn) Zm00025a006591
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G020500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.004G014600 disease resistance protein RGA2, putative, expressed -
3 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -
4 Sobic.001G342000 expressed protein -
5 Sobic.002G111900 receptor-like kinase, putative, expressed -
6 Sobic.009G165100 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
7 Sobic.002G029600 CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
8 Sobic.003G017601 - -
9 Sobic.003G441601 - -
10 Sobic.010G213600 histidine kinase, putative, expressed -
11 Sobic.007G090600 CSLC3 - cellulose synthase-like family C, expressed -
12 Sobic.002G166150 - -
13 Sobic.007G220400 receptor-like protein kinase 2 precursor, putative, expressed -
14 Sobic.005G065700 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
15 Sobic.006G171100 expansin precursor, putative, expressed -
16 Sobic.006G196400 U-box, putative, expressed -
17 Sobic.002G391300 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.002G289500 carbohydrate binding protein, putative, expressed -
19 Sobic.005G134200 "domain confirmed by Pfam database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsGH3.13 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
20 Sobic.006G031100 CAP (Cysteine-rich secretory proteins("PubMedID : 26759170,PubMedID : 24597475")@SCP-like extracellular protein, expressed -


Gene co-expression network
sample Sobic001G218500 Sobic001G218500 Sobic003G020500 Sobic003G020500 Sobic001G218500--Sobic003G020500 Sobic004G014600 Sobic004G014600 Sobic001G218500--Sobic004G014600 Sobic003G079100 Sobic003G079100 Sobic001G218500--Sobic003G079100 Sobic001G342000 Sobic001G342000 Sobic001G218500--Sobic001G342000 Sobic002G111900 Sobic002G111900 Sobic001G218500--Sobic002G111900 Sobic009G165100 Sobic009G165100 Sobic001G218500--Sobic009G165100 Sobic002G029600 Sobic002G029600 Sobic001G218500--Sobic002G029600 Sobic003G017601 Sobic003G017601 Sobic001G218500--Sobic003G017601 Sobic003G441601 Sobic003G441601 Sobic001G218500--Sobic003G441601 Sobic003G020500--Sobic001G218500 Sobic003G020500--Sobic002G111900 Sobic003G020500--Sobic003G079100 Sobic002G391300 Sobic002G391300 Sobic003G020500--Sobic002G391300 Sobic003G020500--Sobic003G441601 Sobic003G020500--Sobic004G014600 Sobic002G289500 Sobic002G289500 Sobic003G020500--Sobic002G289500 Sobic006G171100 Sobic006G171100 Sobic003G020500--Sobic006G171100 Sobic002G029500 Sobic002G029500 Sobic003G020500--Sobic002G029500 Sobic004G014600--Sobic003G441601 Sobic007G090600 Sobic007G090600 Sobic004G014600--Sobic007G090600 Sobic004G014600--Sobic009G165100 Sobic005G182800 Sobic005G182800 Sobic004G014600--Sobic005G182800 Sobic004G014600--Sobic003G079100 Sobic010G213600 Sobic010G213600 Sobic004G014600--Sobic010G213600 Sobic005G182900 Sobic005G182900 Sobic004G014600--Sobic005G182900 Sobic006G031100 Sobic006G031100 Sobic004G014600--Sobic006G031100 Sobic004G014600--Sobic002G289500 Sobic003G079100--Sobic002G029600 Sobic003G079100--Sobic004G014600 Sobic005G065700 Sobic005G065700 Sobic003G079100--Sobic005G065700 Sobic003G079100--Sobic002G029500 Sobic003G079100--Sobic005G182800 Sobic003G079100--Sobic010G213600 Sobic003G079100--Sobic005G182900 Sobic010G152500 Sobic010G152500 Sobic003G079100--Sobic010G152500 Sobic005G071900 Sobic005G071900 Sobic003G079100--Sobic005G071900 Sobic001G342000--Sobic004G014600 Sobic001G342000--Sobic010G213600 Sobic008G033100 Sobic008G033100 Sobic001G342000--Sobic008G033100 Sobic002G166150 Sobic002G166150 Sobic001G342000--Sobic002G166150 Sobic001G342000--Sobic002G029500 Sobic001G342000--Sobic009G165100 Sobic001G342000--Sobic003G079100 Sobic001G272800 Sobic001G272800 Sobic001G342000--Sobic001G272800 Sobic003G255600 Sobic003G255600 Sobic001G342000--Sobic003G255600 Sobic010G191700 Sobic010G191700 Sobic002G111900--Sobic010G191700 Sobic002G111900--Sobic002G391300 Sobic002G111900--Sobic003G441601 Sobic007G220400 Sobic007G220400 Sobic002G111900--Sobic007G220400 Sobic010G241900 Sobic010G241900 Sobic002G111900--Sobic010G241900 Sobic010G010000 Sobic010G010000 Sobic002G111900--Sobic010G010000 Sobic002G111900--Sobic006G171100 Sobic005G046400 Sobic005G046400 Sobic002G111900--Sobic005G046400 Sobic006G059800 Sobic006G059800 Sobic002G111900--Sobic006G059800 Sobic009G165100--Sobic004G014600 Sobic009G165100--Sobic003G441601 Sobic002G019000 Sobic002G019000 Sobic009G165100--Sobic002G019000 Sobic009G165100--Sobic002G391300 Sobic009G165100--Sobic005G065700 Sobic009G165100--Sobic005G182900 Sobic009G165100--Sobic010G213600 Sobic009G165100--Sobic002G111900 Sobic009G165100--Sobic002G289500 Sobic002G029600--Sobic003G079100 Sobic002G029600--Sobic006G031100 Sobic003G215300 Sobic003G215300 Sobic002G029600--Sobic003G215300 Sobic002G029600--Sobic004G014600 Sobic002G029600--Sobic005G065700 Sobic002G029600--Sobic010G152500 Sobic002G029600--Sobic005G071900 Sobic002G029600--Sobic007G090600 Sobic001G506600 Sobic001G506600 Sobic002G029600--Sobic001G506600 Sobic003G017601--Sobic001G218500 Sobic003G017601--Sobic001G342000 Sobic002G183750 Sobic002G183750 Sobic003G017601--Sobic002G183750 Sobic003G017601--Sobic002G111900 Sobic003G017601--Sobic003G079100 Sobic003G017601--Sobic010G213600 Sobic003G017601--Sobic003G020500 Sobic005G223700 Sobic005G223700 Sobic003G017601--Sobic005G223700 Sobic005G175900 Sobic005G175900 Sobic003G017601--Sobic005G175900 Sobic003G441601--Sobic002G391300 Sobic003G441601--Sobic005G046400 Sobic003G441601--Sobic002G111900 Sobic003G441601--Sobic006G171100 Sobic003G441601--Sobic010G010000 Sobic003G441800 Sobic003G441800 Sobic003G441601--Sobic003G441800 Sobic003G441601--Sobic002G289500 Sobic003G441601--Sobic010G191700 Sobic003G441601--Sobic004G014600
Octagon: transcription factors


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