Gene annotation
Transcriptome id Sobic.003G020500.1
Synonym ARAB-1, Sb03g001810
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
GDSL-like lipase/acylhydrolase, putative, expressed
UniProt C5XL11
Pfam PF00657
Panther DB PTHR22835 PTHR22835:SF280
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016788; hydrolase activity, acting on ester bonds


Orthologs (automatic annotation)
TAIR AT1G28670 : GDSL-like Lipase/Acylhydrolase superfamily protein
RAP-DB (Rice) LOC_Os01g11750.1 : GDSL-like lipase/acylhydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a035922
Brachypodium -
Barley -
Wheat TraesCS3B02G163200 , TraesCS3D02G145700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G218500 MATH domain containing protein, expressed -
2 Sobic.002G111900 receptor-like kinase, putative, expressed -
3 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -
4 Sobic.002G391300 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.003G441601 - -
6 Sobic.004G014600 disease resistance protein RGA2, putative, expressed -
7 Sobic.002G289500 carbohydrate binding protein, putative, expressed -
8 Sobic.006G171100 expansin precursor, putative, expressed -
9 Sobic.002G029500 cytochrome P450 84A1, putative, expressed K09755: CYP84A, ferulate-5-hydroxylase
10 Sobic.005G134200 "domain confirmed by Pfam database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsGH3.13 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
11 Sobic.010G010000 plant protein of unknown function domain containing protein, expressed -
12 Sobic.005G035900 PAN domain-containing protein At5g03700 precursor, putative, expressed -
13 Sobic.009G165100 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
14 Sobic.002G082000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
15 Sobic.010G213600 histidine kinase, putative, expressed -
16 Sobic.010G191700 cytochrome P450, putative, expressed -
17 Sobic.005G226400 RGH1A, putative, expressed -
18 Sobic.005G065700 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
19 Sobic.010G241900 Leucine-rich receptor-like protein kinase family protein(PubMedID : 28640841)@serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
20 Sobic.005G182900 NBS-LRR disease resistance protein, putative, expressed -


Gene co-expression network
sample Sobic003G020500 Sobic003G020500 Sobic001G218500 Sobic001G218500 Sobic003G020500--Sobic001G218500 Sobic002G111900 Sobic002G111900 Sobic003G020500--Sobic002G111900 Sobic003G079100 Sobic003G079100 Sobic003G020500--Sobic003G079100 Sobic002G391300 Sobic002G391300 Sobic003G020500--Sobic002G391300 Sobic003G441601 Sobic003G441601 Sobic003G020500--Sobic003G441601 Sobic004G014600 Sobic004G014600 Sobic003G020500--Sobic004G014600 Sobic002G289500 Sobic002G289500 Sobic003G020500--Sobic002G289500 Sobic006G171100 Sobic006G171100 Sobic003G020500--Sobic006G171100 Sobic002G029500 Sobic002G029500 Sobic003G020500--Sobic002G029500 Sobic001G218500--Sobic003G020500 Sobic001G218500--Sobic004G014600 Sobic001G218500--Sobic003G079100 Sobic001G342000 Sobic001G342000 Sobic001G218500--Sobic001G342000 Sobic001G218500--Sobic002G111900 Sobic009G165100 Sobic009G165100 Sobic001G218500--Sobic009G165100 Sobic002G029600 Sobic002G029600 Sobic001G218500--Sobic002G029600 Sobic003G017601 Sobic003G017601 Sobic001G218500--Sobic003G017601 Sobic001G218500--Sobic003G441601 Sobic010G191700 Sobic010G191700 Sobic002G111900--Sobic010G191700 Sobic002G111900--Sobic002G391300 Sobic002G111900--Sobic003G441601 Sobic007G220400 Sobic007G220400 Sobic002G111900--Sobic007G220400 Sobic010G241900 Sobic010G241900 Sobic002G111900--Sobic010G241900 Sobic010G010000 Sobic010G010000 Sobic002G111900--Sobic010G010000 Sobic002G111900--Sobic006G171100 Sobic005G046400 Sobic005G046400 Sobic002G111900--Sobic005G046400 Sobic006G059800 Sobic006G059800 Sobic002G111900--Sobic006G059800 Sobic003G079100--Sobic002G029600 Sobic003G079100--Sobic004G014600 Sobic005G065700 Sobic005G065700 Sobic003G079100--Sobic005G065700 Sobic003G079100--Sobic002G029500 Sobic005G182800 Sobic005G182800 Sobic003G079100--Sobic005G182800 Sobic010G213600 Sobic010G213600 Sobic003G079100--Sobic010G213600 Sobic005G182900 Sobic005G182900 Sobic003G079100--Sobic005G182900 Sobic010G152500 Sobic010G152500 Sobic003G079100--Sobic010G152500 Sobic005G071900 Sobic005G071900 Sobic003G079100--Sobic005G071900 Sobic002G391300--Sobic003G441601 Sobic002G391300--Sobic002G111900 Sobic002G391300--Sobic010G191700 Sobic002G391300--Sobic010G241900 Sobic002G391300--Sobic006G171100 Sobic010G128300 Sobic010G128300 Sobic002G391300--Sobic010G128300 Sobic005G134200 Sobic005G134200 Sobic002G391300--Sobic005G134200 Sobic002G391300--Sobic002G289500 Sobic009G136800 Sobic009G136800 Sobic002G391300--Sobic009G136800 Sobic003G441601--Sobic002G391300 Sobic003G441601--Sobic005G046400 Sobic003G441601--Sobic002G111900 Sobic003G441601--Sobic006G171100 Sobic003G441601--Sobic010G010000 Sobic003G441800 Sobic003G441800 Sobic003G441601--Sobic003G441800 Sobic003G441601--Sobic002G289500 Sobic003G441601--Sobic010G191700 Sobic003G441601--Sobic004G014600 Sobic004G014600--Sobic003G441601 Sobic007G090600 Sobic007G090600 Sobic004G014600--Sobic007G090600 Sobic004G014600--Sobic009G165100 Sobic004G014600--Sobic005G182800 Sobic004G014600--Sobic003G079100 Sobic004G014600--Sobic010G213600 Sobic004G014600--Sobic005G182900 Sobic006G031100 Sobic006G031100 Sobic004G014600--Sobic006G031100 Sobic004G014600--Sobic002G289500 Sobic002G289500--Sobic002G391300 Sobic001G415100 Sobic001G415100 Sobic002G289500--Sobic001G415100 Sobic002G289500--Sobic003G441601 Sobic002G289500--Sobic006G171100 Sobic001G153100 Sobic001G153100 Sobic002G289500--Sobic001G153100 Sobic002G289500--Sobic009G136800 Sobic002G289500--Sobic002G029500 Sobic006G230100 Sobic006G230100 Sobic002G289500--Sobic006G230100 Sobic002G063700 Sobic002G063700 Sobic002G289500--Sobic002G063700 Sobic006G171100--Sobic009G136800 Sobic006G171100--Sobic002G391300 Sobic006G171100--Sobic010G010000 Sobic006G171100--Sobic003G441601 Sobic006G171100--Sobic002G111900 Sobic006G171100--Sobic005G046400 Sobic006G171100--Sobic002G289500 Sobic005G226400 Sobic005G226400 Sobic006G171100--Sobic005G226400 Sobic006G047200 Sobic006G047200 Sobic006G171100--Sobic006G047200 Sobic002G029500--Sobic005G182900 Sobic007G064900 Sobic007G064900 Sobic002G029500--Sobic007G064900 Sobic005G097900 Sobic005G097900 Sobic002G029500--Sobic005G097900 Sobic005G106300 Sobic005G106300 Sobic002G029500--Sobic005G106300 Sobic008G033100 Sobic008G033100 Sobic002G029500--Sobic008G033100 Sobic002G029500--Sobic002G289500 Sobic002G029500--Sobic001G415100 Sobic007G015000 Sobic007G015000 Sobic002G029500--Sobic007G015000 Sobic002G082000 Sobic002G082000 Sobic002G029500--Sobic002G082000
Octagon: transcription factors


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