Gene annotation
Transcriptome id Sobic.004G079900.1
Synonym HMA5, Sb04g006600
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
copper-transporting ATPase, putative, expressed
UniProt C5XXH4
Pfam PF12710 PF00403 PF00122
Panther DB PTHR24093 PTHR24093:SF315
NCBI CDD -
KEGG Orthology K17686; copA, ctpA, P-type Cu+ transporter
Gene Ontology GO:0000166; nucleotide binding


Orthologs (automatic annotation)
TAIR AT1G63440 : heavy metal atpase 5
RAP-DB (Rice) LOC_Os02g10290.1 : copper-transporting ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a019634
Brachypodium KQJ93861 , KQJ93862
Barley HORVU6Hr1G033380.1 , HORVU6Hr1G033380.3 , HORVU6Hr1G033380.2 , HORVU7Hr1G108890.5 , HORVU7Hr1G108890.4 , HORVU7Hr1G108890.7 , HORVU7Hr1G108890.6 , HORVU7Hr1G108890.1 , HORVU7Hr1G108890.3 , HORVU7Hr1G108890.2 , HORVU7Hr1G108890.9 , HORVU7Hr1G108890.8
Wheat TraesCS6D02G153600 , TraesCS6A02G158900 , TraesCS6B02G192400 , TraesCS6B02G192400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G153100 sulfate transporter, putative, expressed K17470: sulfate transporter 1, high-affinity
2 Sobic.004G261500 phosphoribosyl transferase, putative, expressed -
3 Sobic.008G058600 protein kinase family protein, putative, expressed -
4 Sobic.006G047200 helix-loop-helix DNA-binding domain containing protein, expressed -
5 Sobic.009G065700 - -
6 Sobic.005G101000 - -
7 Sobic.006G171100 expansin precursor, putative, expressed -
8 Sobic.001G181600 dehydrogenase/reductase, putative, expressed -
9 Sobic.010G010000 plant protein of unknown function domain containing protein, expressed -
10 Sobic.006G230100 TKL_IRAK_DUF26-ld.1 - DUF26 kinases have homology to DUF26 containing loci, expressed -
11 Sobic.005G035900 PAN domain-containing protein At5g03700 precursor, putative, expressed -
12 Sobic.007G202480 - -
13 Sobic.005G205400 - -
14 Sobic.001G395900 Nicotianamine synthase 4("PubMedID : 26759170,PubMedID : 24597475")@nicotianamine synthase, putative, expressed K05953: nicotianamine synthase
15 Sobic.002G096000 copper methylamine oxidase precursor, putative, expressed K00276: AOC3, AOC2, primary-amine oxidase
16 Sobic.002G289500 carbohydrate binding protein, putative, expressed -
17 Sobic.006G059800 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
18 Sobic.009G136800 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
19 Sobic.003G154500 helix-loop-helix DNA-binding domain containing protein, expressed -
20 Sobic.004G299500 - -


Gene co-expression network
sample Sobic004G079900 Sobic004G079900 Sobic001G153100 Sobic001G153100 Sobic004G079900--Sobic001G153100 Sobic004G261500 Sobic004G261500 Sobic004G079900--Sobic004G261500 Sobic008G058600 Sobic008G058600 Sobic004G079900--Sobic008G058600 Sobic006G047200 Sobic006G047200 Sobic004G079900--Sobic006G047200 Sobic009G065700 Sobic009G065700 Sobic004G079900--Sobic009G065700 Sobic005G101000 Sobic005G101000 Sobic004G079900--Sobic005G101000 Sobic006G171100 Sobic006G171100 Sobic004G079900--Sobic006G171100 Sobic001G181600 Sobic001G181600 Sobic004G079900--Sobic001G181600 Sobic010G010000 Sobic010G010000 Sobic004G079900--Sobic010G010000 Sobic007G202480 Sobic007G202480 Sobic001G153100--Sobic007G202480 Sobic005G069166 Sobic005G069166 Sobic001G153100--Sobic005G069166 Sobic006G230100 Sobic006G230100 Sobic001G153100--Sobic006G230100 Sobic004G299500 Sobic004G299500 Sobic001G153100--Sobic004G299500 Sobic006G229901 Sobic006G229901 Sobic001G153100--Sobic006G229901 Sobic002G063700 Sobic002G063700 Sobic001G153100--Sobic002G063700 Sobic001G395900 Sobic001G395900 Sobic001G153100--Sobic001G395900 Sobic001G415100 Sobic001G415100 Sobic001G153100--Sobic001G415100 Sobic002G289500 Sobic002G289500 Sobic001G153100--Sobic002G289500 Sobic004G261500--Sobic001G395900 Sobic004G261500--Sobic005G101000 Sobic004G261500--Sobic006G230100 Sobic004G261500--Sobic004G299500 Sobic004G261500--Sobic008G058600 Sobic004G261500--Sobic007G202480 Sobic006G230200 Sobic006G230200 Sobic004G261500--Sobic006G230200 Sobic004G261500--Sobic001G153100 Sobic003G154500 Sobic003G154500 Sobic004G261500--Sobic003G154500 Sobic008G058600--Sobic005G101000 Sobic003G045650 Sobic003G045650 Sobic008G058600--Sobic003G045650 Sobic008G058600--Sobic001G395900 Sobic008G058600--Sobic004G299500 Sobic001G234100 Sobic001G234100 Sobic008G058600--Sobic001G234100 Sobic005G176600 Sobic005G176600 Sobic008G058600--Sobic005G176600 Sobic008G058600--Sobic007G202480 Sobic008G058600--Sobic006G230100 Sobic008G058600--Sobic006G229901 Sobic005G035900 Sobic005G035900 Sobic006G047200--Sobic005G035900 Sobic005G205400 Sobic005G205400 Sobic006G047200--Sobic005G205400 Sobic008G084800 Sobic008G084800 Sobic006G047200--Sobic008G084800 Sobic002G392000 Sobic002G392000 Sobic006G047200--Sobic002G392000 Sobic006G047200--Sobic001G234100 Sobic006G047200--Sobic005G101000 Sobic009G136800 Sobic009G136800 Sobic006G047200--Sobic009G136800 Sobic010G241900 Sobic010G241900 Sobic006G047200--Sobic010G241900 Sobic005G134200 Sobic005G134200 Sobic006G047200--Sobic005G134200 Sobic003G167300 Sobic003G167300 Sobic009G065700--Sobic003G167300 Sobic003G441800 Sobic003G441800 Sobic009G065700--Sobic003G441800 Sobic002G111900 Sobic002G111900 Sobic009G065700--Sobic002G111900 Sobic009G065700--Sobic010G010000 Sobic009G065700--Sobic002G289500 Sobic001G499900 Sobic001G499900 Sobic009G065700--Sobic001G499900 Sobic003G441601 Sobic003G441601 Sobic009G065700--Sobic003G441601 Sobic009G065700--Sobic010G241900 Sobic001G348400 Sobic001G348400 Sobic009G065700--Sobic001G348400 Sobic005G101000--Sobic001G234100 Sobic005G101000--Sobic001G395900 Sobic005G101000--Sobic008G058600 Sobic005G101000--Sobic008G084800 Sobic005G101000--Sobic006G047200 Sobic005G212800 Sobic005G212800 Sobic005G101000--Sobic005G212800 Sobic005G101000--Sobic005G205400 Sobic005G101000--Sobic004G299500 Sobic005G101000--Sobic007G202480 Sobic006G171100--Sobic009G136800 Sobic002G391300 Sobic002G391300 Sobic006G171100--Sobic002G391300 Sobic006G171100--Sobic010G010000 Sobic006G171100--Sobic003G441601 Sobic006G171100--Sobic002G111900 Sobic005G046400 Sobic005G046400 Sobic006G171100--Sobic005G046400 Sobic006G171100--Sobic002G289500 Sobic005G226400 Sobic005G226400 Sobic006G171100--Sobic005G226400 Sobic006G171100--Sobic006G047200 Sobic001G181600--Sobic003G154500 Sobic005G119900 Sobic005G119900 Sobic001G181600--Sobic005G119900 Sobic003G441700 Sobic003G441700 Sobic001G181600--Sobic003G441700 Sobic006G097900 Sobic006G097900 Sobic001G181600--Sobic006G097900 Sobic001G218400 Sobic001G218400 Sobic001G181600--Sobic001G218400 Sobic009G055300 Sobic009G055300 Sobic001G181600--Sobic009G055300 Sobic007G212000 Sobic007G212000 Sobic001G181600--Sobic007G212000 Sobic001G181600--Sobic007G202480 Sobic007G015000 Sobic007G015000 Sobic001G181600--Sobic007G015000 Sobic010G010000--Sobic006G171100 Sobic010G010000--Sobic002G111900 Sobic010G010000--Sobic003G441601 Sobic010G010000--Sobic002G391300 Sobic010G010000--Sobic009G136800 Sobic010G010000--Sobic009G055300 Sobic010G010000--Sobic002G289500 Sobic010G010000--Sobic005G226400 Sobic010G010000--Sobic002G063700
Octagon: transcription factors


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