Gene annotation
Transcriptome id Sobic.001G006201.1
Synonym -
Functional annotation -
UniProt A0A1B6QGS2
Pfam PF03171 PF14226
Panther DB PTHR10209 PTHR10209:SF178
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT4G25300 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os03g63900.1 : 1-aminocyclopropane-1-carboxylate oxidase 2, putative, expressed
MaizeGDB (Corn) Zm00025a000304
Brachypodium KQJ97779
Barley HORVU3Hr1G091210.2 , HORVU3Hr1G091210.3 , HORVU3Hr1G091210.1
Wheat TraesCS3D02G403000 , TraesCS3B02G440500 , TraesCS3A02G407800 , TraesCS5A02G539900 , TraesCS4B02G374100 , TraesCS4B02G374100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G227700 cytochrome P450 72A1, putative, expressed -
2 Sobic.003G257400 "BG3(Ortholog in rice:Xiao et al., 20018)"(PubMedID : 31659870)@purine permease, putative, expressed -
3 Sobic.003G064800 dirigent, putative, expressed -
4 Sobic.004G306900 amino acid transporter, putative, expressed -
5 Sobic.010G192366 - -
6 Sobic.001G238000 expansin precursor, putative, expressed -
7 Sobic.010G071400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.010G097200 expressed protein -
9 Sobic.001G421000 protein phosphatase 2C, putative, expressed -
10 Sobic.008G037900 transcription factor, putative, expressed K14431: transcription factor TGA
11 Sobic.006G028500 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
12 Sobic.003G240400 leaf senescence related protein, putative, expressed -
13 Sobic.010G234500 O-methyltransferase, putative, expressed -
14 Sobic.005G127400 expressed protein -
15 Sobic.006G003100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1295 domain containing protein, putative, expressed -
16 Sobic.006G150100 Down-regulated by silicon application(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
17 Sobic.003G140700 peroxidase precursor, putative, expressed -
18 Sobic.003G000100 STIGL1 - Stigma-specific Stig1 family protein precursor, expressed -
19 Sobic.001G216500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@nodulin, putative, expressed K07192: flotillin
20 Sobic.004G110700 DNA binding protein, putative, expressed -


Gene co-expression network
sample Sobic001G006201 Sobic001G006201 Sobic003G227700 Sobic003G227700 Sobic001G006201--Sobic003G227700 Sobic003G257400 Sobic003G257400 Sobic001G006201--Sobic003G257400 Sobic003G064800 Sobic003G064800 Sobic001G006201--Sobic003G064800 Sobic004G306900 Sobic004G306900 Sobic001G006201--Sobic004G306900 Sobic010G192366 Sobic010G192366 Sobic001G006201--Sobic010G192366 Sobic001G238000 Sobic001G238000 Sobic001G006201--Sobic001G238000 Sobic010G071400 Sobic010G071400 Sobic001G006201--Sobic010G071400 Sobic010G097200 Sobic010G097200 Sobic001G006201--Sobic010G097200 Sobic001G421000 Sobic001G421000 Sobic001G006201--Sobic001G421000 Sobic010G069900 Sobic010G069900 Sobic003G227700--Sobic010G069900 Sobic003G227700--Sobic003G257400 Sobic003G227700--Sobic010G071400 Sobic006G003100 Sobic006G003100 Sobic003G227700--Sobic006G003100 Sobic003G227700--Sobic001G006201 Sobic007G158800 Sobic007G158800 Sobic003G227700--Sobic007G158800 Sobic003G000100 Sobic003G000100 Sobic003G227700--Sobic003G000100 Sobic010G152400 Sobic010G152400 Sobic003G227700--Sobic010G152400 Sobic004G106100 Sobic004G106100 Sobic003G227700--Sobic004G106100 Sobic003G257400--Sobic003G000100 Sobic007G086300 Sobic007G086300 Sobic003G257400--Sobic007G086300 Sobic003G257400--Sobic004G106100 Sobic006G106900 Sobic006G106900 Sobic003G257400--Sobic006G106900 Sobic001G414800 Sobic001G414800 Sobic003G257400--Sobic001G414800 Sobic003G353200 Sobic003G353200 Sobic003G257400--Sobic003G353200 Sobic003G280000 Sobic003G280000 Sobic003G257400--Sobic003G280000 Sobic003G257400--Sobic006G003100 Sobic003G257400--Sobic004G306900 Sobic005G127400 Sobic005G127400 Sobic003G064800--Sobic005G127400 Sobic002G255000 Sobic002G255000 Sobic003G064800--Sobic002G255000 Sobic003G064800--Sobic004G306900 Sobic001G438200 Sobic001G438200 Sobic003G064800--Sobic001G438200 Sobic003G064800--Sobic006G106900 Sobic001G238200 Sobic001G238200 Sobic003G064800--Sobic001G238200 Sobic003G140700 Sobic003G140700 Sobic003G064800--Sobic003G140700 Sobic003G064800--Sobic007G086300 Sobic010G234500 Sobic010G234500 Sobic003G064800--Sobic010G234500 Sobic006G028500 Sobic006G028500 Sobic004G306900--Sobic006G028500 Sobic004G306900--Sobic003G064800 Sobic004G306900--Sobic007G086300 Sobic004G306900--Sobic003G000100 Sobic004G306900--Sobic004G106100 Sobic006G019700 Sobic006G019700 Sobic004G306900--Sobic006G019700 Sobic003G319400 Sobic003G319400 Sobic004G306900--Sobic003G319400 Sobic004G306900--Sobic010G152400 Sobic004G322100 Sobic004G322100 Sobic004G306900--Sobic004G322100 Sobic010G192432 Sobic010G192432 Sobic010G192366--Sobic010G192432 Sobic010G192366--Sobic010G097200 Sobic001G483600 Sobic001G483600 Sobic010G192366--Sobic001G483600 Sobic004G119800 Sobic004G119800 Sobic010G192366--Sobic004G119800 Sobic008G037900 Sobic008G037900 Sobic010G192366--Sobic008G037900 Sobic006G196400 Sobic006G196400 Sobic010G192366--Sobic006G196400 Sobic005G080600 Sobic005G080600 Sobic010G192366--Sobic005G080600 Sobic006G135300 Sobic006G135300 Sobic010G192366--Sobic006G135300 Sobic007G100700 Sobic007G100700 Sobic010G192366--Sobic007G100700 Sobic002G377700 Sobic002G377700 Sobic001G238000--Sobic002G377700 Sobic001G238000--Sobic001G238200 Sobic001G238000--Sobic003G140700 Sobic001G237800 Sobic001G237800 Sobic001G238000--Sobic001G237800 Sobic001G238000--Sobic004G306900 Sobic009G219200 Sobic009G219200 Sobic001G238000--Sobic009G219200 Sobic001G238000--Sobic003G064800 Sobic010G162800 Sobic010G162800 Sobic001G238000--Sobic010G162800 Sobic001G238000--Sobic006G028500 Sobic006G274933 Sobic006G274933 Sobic010G071400--Sobic006G274933 Sobic010G071400--Sobic003G227700 Sobic002G183700 Sobic002G183700 Sobic010G071400--Sobic002G183700 Sobic003G119500 Sobic003G119500 Sobic010G071400--Sobic003G119500 Sobic004G029100 Sobic004G029100 Sobic010G071400--Sobic004G029100 Sobic010G071400--Sobic004G322100 Sobic010G071400--Sobic003G140700 Sobic008G019800 Sobic008G019800 Sobic010G071400--Sobic008G019800 Sobic006G256900 Sobic006G256900 Sobic010G071400--Sobic006G256900 Sobic003G167300 Sobic003G167300 Sobic010G097200--Sobic003G167300 Sobic006G205700 Sobic006G205700 Sobic010G097200--Sobic006G205700 Sobic010G097200--Sobic008G037900 Sobic007G037600 Sobic007G037600 Sobic010G097200--Sobic007G037600 Sobic005G033000 Sobic005G033000 Sobic010G097200--Sobic005G033000 Sobic009G065700 Sobic009G065700 Sobic010G097200--Sobic009G065700 Sobic003G441800 Sobic003G441800 Sobic010G097200--Sobic003G441800 Sobic010G097200--Sobic004G119800 Sobic004G014600 Sobic004G014600 Sobic010G097200--Sobic004G014600 Sobic001G421000--Sobic003G257400 Sobic001G421000--Sobic006G106900 Sobic001G421000--Sobic003G280000 Sobic009G181600 Sobic009G181600 Sobic001G421000--Sobic009G181600 Sobic001G421000--Sobic004G119800 Sobic005G202300 Sobic005G202300 Sobic001G421000--Sobic005G202300 Sobic001G421000--Sobic004G306900 Sobic001G421000--Sobic007G086300 Sobic001G421000--Sobic003G000100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.