Gene annotation
Transcriptome id Sobic.001G421000.1,Sobic.001G421000.2,Sobic.001G421000.3
Synonym PLL5, Sb01g039615
Functional annotation protein phosphatase 2C, putative, expressed
UniProt A0A1Z5SA71 , C5WPG8
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF349
NCBI CDD KOG0700; Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT1G07630 : pol-like 5
RAP-DB (Rice) LOC_Os03g16760.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a001837 , Zm00025a052757 , Zm00025a052758
Brachypodium KQK22341
Barley HORVU5Hr1G113240.2 , HORVU5Hr1G113240.3 , HORVU5Hr1G113240.1 , HORVU5Hr1G113240.4 , HORVU5Hr1G113240.5
Wheat TraesCS4B02G381900 , TraesCS4B02G381900 , TraesCS4B02G381900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G257400 "BG3(Ortholog in rice:Xiao et al., 20018)"(PubMedID : 31659870)@purine permease, putative, expressed -
2 Sobic.006G106900 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
3 Sobic.003G280000 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.009G181600 indole-3-acetate beta-glucosyltransferase, putative, expressed -
5 Sobic.004G119800 expansin precursor, putative, expressed -
6 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
7 Sobic.004G306900 amino acid transporter, putative, expressed -
8 Sobic.007G086300 glycosyl hydrolases family 16, putative, expressed -
9 Sobic.003G000100 STIGL1 - Stigma-specific Stig1 family protein precursor, expressed -
10 Sobic.003G319400 receptor protein kinase, putative, expressed -
11 Sobic.003G353200 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Laccase 2 LAC2 (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
12 Sobic.004G106100 peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.001G414800 dirigent, putative, expressed -
14 Sobic.003G064800 dirigent, putative, expressed -
15 Sobic.010G097200 expressed protein -
16 Sobic.010G031700 thaumatin, putative, expressed -
17 Sobic.002G343100 protein kinase, putative, expressed -
18 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
19 Sobic.006G205700 glycosyl hydrolases family 16, putative, expressed -
20 Sobic.006G092700 MLO domain containing protein, putative, expressed K08472: mlo protein


Gene co-expression network
sample Sobic001G421000 Sobic001G421000 Sobic003G257400 Sobic003G257400 Sobic001G421000--Sobic003G257400 Sobic006G106900 Sobic006G106900 Sobic001G421000--Sobic006G106900 Sobic003G280000 Sobic003G280000 Sobic001G421000--Sobic003G280000 Sobic009G181600 Sobic009G181600 Sobic001G421000--Sobic009G181600 Sobic004G119800 Sobic004G119800 Sobic001G421000--Sobic004G119800 Sobic005G202300 Sobic005G202300 Sobic001G421000--Sobic005G202300 Sobic004G306900 Sobic004G306900 Sobic001G421000--Sobic004G306900 Sobic007G086300 Sobic007G086300 Sobic001G421000--Sobic007G086300 Sobic003G000100 Sobic003G000100 Sobic001G421000--Sobic003G000100 Sobic003G257400--Sobic003G000100 Sobic003G257400--Sobic007G086300 Sobic004G106100 Sobic004G106100 Sobic003G257400--Sobic004G106100 Sobic003G257400--Sobic006G106900 Sobic001G414800 Sobic001G414800 Sobic003G257400--Sobic001G414800 Sobic003G353200 Sobic003G353200 Sobic003G257400--Sobic003G353200 Sobic003G257400--Sobic003G280000 Sobic006G003100 Sobic006G003100 Sobic003G257400--Sobic006G003100 Sobic003G257400--Sobic004G306900 Sobic003G319400 Sobic003G319400 Sobic006G106900--Sobic003G319400 Sobic006G106900--Sobic005G202300 Sobic003G064800 Sobic003G064800 Sobic006G106900--Sobic003G064800 Sobic006G106900--Sobic001G414800 Sobic006G106900--Sobic004G306900 Sobic001G507100 Sobic001G507100 Sobic006G106900--Sobic001G507100 Sobic006G106900--Sobic009G181600 Sobic001G438200 Sobic001G438200 Sobic006G106900--Sobic001G438200 Sobic006G106900--Sobic003G280000 Sobic003G280000--Sobic005G202300 Sobic003G280000--Sobic003G353200 Sobic003G280000--Sobic006G106900 Sobic003G280000--Sobic003G319400 Sobic010G031700 Sobic010G031700 Sobic003G280000--Sobic010G031700 Sobic003G053200 Sobic003G053200 Sobic003G280000--Sobic003G053200 Sobic003G280000--Sobic003G257400 Sobic003G280000--Sobic009G181600 Sobic001G218400 Sobic001G218400 Sobic003G280000--Sobic001G218400 Sobic009G181600--Sobic006G106900 Sobic009G181600--Sobic003G319400 Sobic009G181600--Sobic005G202300 Sobic006G092700 Sobic006G092700 Sobic009G181600--Sobic006G092700 Sobic008G164450 Sobic008G164450 Sobic009G181600--Sobic008G164450 Sobic002G343100 Sobic002G343100 Sobic009G181600--Sobic002G343100 Sobic004G029400 Sobic004G029400 Sobic009G181600--Sobic004G029400 Sobic007G037600 Sobic007G037600 Sobic009G181600--Sobic007G037600 Sobic009G181600--Sobic010G031700 Sobic005G080600 Sobic005G080600 Sobic004G119800--Sobic005G080600 Sobic004G119800--Sobic004G306900 Sobic006G196400 Sobic006G196400 Sobic004G119800--Sobic006G196400 Sobic009G259800 Sobic009G259800 Sobic004G119800--Sobic009G259800 Sobic004G119800--Sobic001G218400 Sobic004G119800--Sobic006G106900 Sobic007G206800 Sobic007G206800 Sobic004G119800--Sobic007G206800 Sobic006G205700 Sobic006G205700 Sobic004G119800--Sobic006G205700 Sobic004G119800--Sobic006G092700 Sobic005G202300--Sobic006G106900 Sobic005G202300--Sobic003G319400 Sobic005G202300--Sobic003G280000 Sobic005G202300--Sobic009G181600 Sobic005G202300--Sobic003G053200 Sobic005G202300--Sobic010G031700 Sobic005G202300--Sobic003G353200 Sobic005G202300--Sobic004G029400 Sobic001G058300 Sobic001G058300 Sobic005G202300--Sobic001G058300 Sobic006G028500 Sobic006G028500 Sobic004G306900--Sobic006G028500 Sobic004G306900--Sobic003G064800 Sobic004G306900--Sobic007G086300 Sobic004G306900--Sobic003G000100 Sobic004G306900--Sobic004G106100 Sobic006G019700 Sobic006G019700 Sobic004G306900--Sobic006G019700 Sobic004G306900--Sobic003G319400 Sobic010G152400 Sobic010G152400 Sobic004G306900--Sobic010G152400 Sobic004G322100 Sobic004G322100 Sobic004G306900--Sobic004G322100 Sobic007G086300--Sobic004G106100 Sobic007G086300--Sobic004G306900 Sobic007G086300--Sobic003G064800 Sobic007G086300--Sobic006G205700 Sobic007G086300--Sobic003G000100 Sobic002G392100 Sobic002G392100 Sobic007G086300--Sobic002G392100 Sobic001G319300 Sobic001G319300 Sobic007G086300--Sobic001G319300 Sobic008G034900 Sobic008G034900 Sobic007G086300--Sobic008G034900 Sobic007G086300--Sobic003G319400 Sobic003G000100--Sobic010G152400 Sobic003G000100--Sobic004G322100 Sobic003G000100--Sobic006G003100 Sobic003G000100--Sobic004G306900 Sobic003G000100--Sobic006G092700 Sobic003G000100--Sobic004G106100 Sobic004G271800 Sobic004G271800 Sobic003G000100--Sobic004G271800 Sobic003G240400 Sobic003G240400 Sobic003G000100--Sobic003G240400 Sobic003G000100--Sobic007G086300
Octagon: transcription factors


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