Gene annotation
Transcriptome id Sobic.001G414800.1
Synonym Sb01g039060
Functional annotation dirigent, putative, expressed
UniProt C5WPA4
Pfam PF03018
Panther DB PTHR21495 PTHR21495:SF51
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G55230 : Disease resistance-responsive (dirigent-like protein) family protein
RAP-DB (Rice) LOC_Os03g17220.1 : dirigent, putative, expressed
MaizeGDB (Corn) Zm00025a052724
Brachypodium -
Barley -
Wheat TraesCS4B02G202600 , TraesCS4D02G203500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G106900 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
2 Sobic.001G507100 dirigent, putative, expressed -
3 Sobic.010G191600 cytochrome P450, putative, expressed -
4 Sobic.007G206800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like protein kinase, putative, expressed -
5 Sobic.003G064800 dirigent, putative, expressed -
6 Sobic.005G217766 - -
7 Sobic.005G097400 cell death associated protein, putative, expressed -
8 Sobic.007G086300 glycosyl hydrolases family 16, putative, expressed -
9 Sobic.008G022100 nucleoside-triphosphatase, putative, expressed K14641: apyrase
10 Sobic.001G499900 expansin precursor, putative, expressed -
11 Sobic.002G391400 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.006G205700 glycosyl hydrolases family 16, putative, expressed -
13 Sobic.003G167300 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.004G106100 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.006G133300 expressed protein -
16 Sobic.003G257400 "BG3(Ortholog in rice:Xiao et al., 20018)"(PubMedID : 31659870)@purine permease, putative, expressed -
17 Sobic.002G111900 receptor-like kinase, putative, expressed -
18 Sobic.002G392100 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
20 Sobic.007G220400 receptor-like protein kinase 2 precursor, putative, expressed -


Gene co-expression network
sample Sobic001G414800 Sobic001G414800 Sobic006G106900 Sobic006G106900 Sobic001G414800--Sobic006G106900 Sobic001G507100 Sobic001G507100 Sobic001G414800--Sobic001G507100 Sobic010G191600 Sobic010G191600 Sobic001G414800--Sobic010G191600 Sobic007G206800 Sobic007G206800 Sobic001G414800--Sobic007G206800 Sobic003G064800 Sobic003G064800 Sobic001G414800--Sobic003G064800 Sobic005G217766 Sobic005G217766 Sobic001G414800--Sobic005G217766 Sobic005G097400 Sobic005G097400 Sobic001G414800--Sobic005G097400 Sobic007G086300 Sobic007G086300 Sobic001G414800--Sobic007G086300 Sobic008G022100 Sobic008G022100 Sobic001G414800--Sobic008G022100 Sobic003G319400 Sobic003G319400 Sobic006G106900--Sobic003G319400 Sobic005G202300 Sobic005G202300 Sobic006G106900--Sobic005G202300 Sobic006G106900--Sobic003G064800 Sobic006G106900--Sobic001G414800 Sobic004G306900 Sobic004G306900 Sobic006G106900--Sobic004G306900 Sobic006G106900--Sobic001G507100 Sobic009G181600 Sobic009G181600 Sobic006G106900--Sobic009G181600 Sobic001G438200 Sobic001G438200 Sobic006G106900--Sobic001G438200 Sobic003G280000 Sobic003G280000 Sobic006G106900--Sobic003G280000 Sobic001G507100--Sobic001G414800 Sobic001G507100--Sobic006G106900 Sobic001G507100--Sobic003G064800 Sobic001G507100--Sobic004G306900 Sobic001G507100--Sobic007G086300 Sobic004G106100 Sobic004G106100 Sobic001G507100--Sobic004G106100 Sobic006G133200 Sobic006G133200 Sobic001G507100--Sobic006G133200 Sobic001G507100--Sobic003G319400 Sobic001G507100--Sobic005G202300 Sobic010G191600--Sobic005G217766 Sobic010G191600--Sobic005G097400 Sobic002G111900 Sobic002G111900 Sobic010G191600--Sobic002G111900 Sobic002G391400 Sobic002G391400 Sobic010G191600--Sobic002G391400 Sobic006G205700 Sobic006G205700 Sobic010G191600--Sobic006G205700 Sobic001G218400 Sobic001G218400 Sobic010G191600--Sobic001G218400 Sobic010G191700 Sobic010G191700 Sobic010G191600--Sobic010G191700 Sobic003G441800 Sobic003G441800 Sobic010G191600--Sobic003G441800 Sobic010G191600--Sobic007G206800 Sobic007G206800--Sobic002G391400 Sobic002G334000 Sobic002G334000 Sobic007G206800--Sobic002G334000 Sobic007G220400 Sobic007G220400 Sobic007G206800--Sobic007G220400 Sobic010G241900 Sobic010G241900 Sobic007G206800--Sobic010G241900 Sobic007G206800--Sobic010G191700 Sobic007G206800--Sobic006G205700 Sobic005G080600 Sobic005G080600 Sobic007G206800--Sobic005G080600 Sobic007G206800--Sobic002G111900 Sobic002G392100 Sobic002G392100 Sobic007G206800--Sobic002G392100 Sobic005G127400 Sobic005G127400 Sobic003G064800--Sobic005G127400 Sobic002G255000 Sobic002G255000 Sobic003G064800--Sobic002G255000 Sobic003G064800--Sobic004G306900 Sobic003G064800--Sobic001G438200 Sobic003G064800--Sobic006G106900 Sobic001G238200 Sobic001G238200 Sobic003G064800--Sobic001G238200 Sobic003G140700 Sobic003G140700 Sobic003G064800--Sobic003G140700 Sobic003G064800--Sobic007G086300 Sobic010G234500 Sobic010G234500 Sobic003G064800--Sobic010G234500 Sobic005G217766--Sobic010G191600 Sobic005G217766--Sobic002G391400 Sobic005G217766--Sobic002G111900 Sobic005G217766--Sobic006G205700 Sobic005G217766--Sobic001G414800 Sobic005G217766--Sobic007G206800 Sobic005G217766--Sobic003G441800 Sobic005G217766--Sobic010G191700 Sobic005G217766--Sobic004G106100 Sobic005G097400--Sobic010G191600 Sobic002G118801 Sobic002G118801 Sobic005G097400--Sobic002G118801 Sobic005G097400--Sobic006G205700 Sobic001G539200 Sobic001G539200 Sobic005G097400--Sobic001G539200 Sobic005G097400--Sobic004G106100 Sobic005G097400--Sobic001G414800 Sobic005G097400--Sobic002G391400 Sobic003G167300 Sobic003G167300 Sobic005G097400--Sobic003G167300 Sobic005G097400--Sobic007G086300 Sobic007G086300--Sobic004G106100 Sobic007G086300--Sobic004G306900 Sobic007G086300--Sobic003G064800 Sobic007G086300--Sobic006G205700 Sobic003G000100 Sobic003G000100 Sobic007G086300--Sobic003G000100 Sobic007G086300--Sobic002G392100 Sobic001G319300 Sobic001G319300 Sobic007G086300--Sobic001G319300 Sobic008G034900 Sobic008G034900 Sobic007G086300--Sobic008G034900 Sobic007G086300--Sobic003G319400 Sobic008G022100--Sobic003G167300 Sobic001G499900 Sobic001G499900 Sobic008G022100--Sobic001G499900 Sobic008G022100--Sobic001G414800 Sobic008G022100--Sobic006G205700 Sobic008G022100--Sobic007G206800 Sobic008G022100--Sobic007G220400 Sobic008G022100--Sobic002G391400 Sobic008G022100--Sobic005G097400 Sobic008G022100--Sobic010G241900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.