Gene annotation
Transcriptome id Sobic.006G106900.1
Synonym Sb06g018970, Casparian strip membrane protein 4, SbCASP4
Functional annotation "cell wall modification, deposition of casparian strips, endodermis, transmembrane" (PubMedID : 24920445)
membrane associated DUF588 domain containing protein, putative, expressed
UniProt C5Y9U6
Pfam PF04535
Panther DB PTHR11615 PTHR11615:SF141
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G15290 : Uncharacterised protein family (UPF0497)
RAP-DB (Rice) LOC_Os04g38690.1 : membrane associated DUF588 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022024 , Zm00025a011119 , Zm00025a056222
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G319400 receptor protein kinase, putative, expressed -
2 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
3 Sobic.003G064800 dirigent, putative, expressed -
4 Sobic.001G414800 dirigent, putative, expressed -
5 Sobic.004G306900 amino acid transporter, putative, expressed -
6 Sobic.001G507100 dirigent, putative, expressed -
7 Sobic.009G181600 indole-3-acetate beta-glucosyltransferase, putative, expressed -
8 Sobic.001G438200 expressed protein -
9 Sobic.003G280000 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.007G086300 glycosyl hydrolases family 16, putative, expressed -
11 Sobic.007G100700 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
12 Sobic.004G106100 peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.002G255000 AIR12, putative, expressed -
14 Sobic.001G238200 expansin precursor, putative, expressed -
15 Sobic.007G008600 GLTP domain containing protein, putative, expressed -
16 Sobic.003G167300 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.001G416100 - -
18 Sobic.003G257400 "BG3(Ortholog in rice:Xiao et al., 20018)"(PubMedID : 31659870)@purine permease, putative, expressed -
19 Sobic.003G353200 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Laccase 2 LAC2 (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
20 Sobic.004G119800 expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic006G106900 Sobic006G106900 Sobic003G319400 Sobic003G319400 Sobic006G106900--Sobic003G319400 Sobic005G202300 Sobic005G202300 Sobic006G106900--Sobic005G202300 Sobic003G064800 Sobic003G064800 Sobic006G106900--Sobic003G064800 Sobic001G414800 Sobic001G414800 Sobic006G106900--Sobic001G414800 Sobic004G306900 Sobic004G306900 Sobic006G106900--Sobic004G306900 Sobic001G507100 Sobic001G507100 Sobic006G106900--Sobic001G507100 Sobic009G181600 Sobic009G181600 Sobic006G106900--Sobic009G181600 Sobic001G438200 Sobic001G438200 Sobic006G106900--Sobic001G438200 Sobic003G280000 Sobic003G280000 Sobic006G106900--Sobic003G280000 Sobic003G319400--Sobic006G106900 Sobic003G319400--Sobic005G202300 Sobic003G319400--Sobic004G306900 Sobic003G319400--Sobic001G438200 Sobic003G319400--Sobic009G181600 Sobic007G086300 Sobic007G086300 Sobic003G319400--Sobic007G086300 Sobic003G282200 Sobic003G282200 Sobic003G319400--Sobic003G282200 Sobic003G319400--Sobic003G064800 Sobic003G319400--Sobic003G280000 Sobic005G202300--Sobic006G106900 Sobic005G202300--Sobic003G319400 Sobic005G202300--Sobic003G280000 Sobic005G202300--Sobic009G181600 Sobic003G053200 Sobic003G053200 Sobic005G202300--Sobic003G053200 Sobic010G031700 Sobic010G031700 Sobic005G202300--Sobic010G031700 Sobic003G353200 Sobic003G353200 Sobic005G202300--Sobic003G353200 Sobic004G029400 Sobic004G029400 Sobic005G202300--Sobic004G029400 Sobic001G058300 Sobic001G058300 Sobic005G202300--Sobic001G058300 Sobic005G127400 Sobic005G127400 Sobic003G064800--Sobic005G127400 Sobic002G255000 Sobic002G255000 Sobic003G064800--Sobic002G255000 Sobic003G064800--Sobic004G306900 Sobic003G064800--Sobic001G438200 Sobic003G064800--Sobic006G106900 Sobic001G238200 Sobic001G238200 Sobic003G064800--Sobic001G238200 Sobic003G140700 Sobic003G140700 Sobic003G064800--Sobic003G140700 Sobic003G064800--Sobic007G086300 Sobic010G234500 Sobic010G234500 Sobic003G064800--Sobic010G234500 Sobic001G414800--Sobic006G106900 Sobic001G414800--Sobic001G507100 Sobic010G191600 Sobic010G191600 Sobic001G414800--Sobic010G191600 Sobic007G206800 Sobic007G206800 Sobic001G414800--Sobic007G206800 Sobic001G414800--Sobic003G064800 Sobic005G217766 Sobic005G217766 Sobic001G414800--Sobic005G217766 Sobic005G097400 Sobic005G097400 Sobic001G414800--Sobic005G097400 Sobic001G414800--Sobic007G086300 Sobic008G022100 Sobic008G022100 Sobic001G414800--Sobic008G022100 Sobic006G028500 Sobic006G028500 Sobic004G306900--Sobic006G028500 Sobic004G306900--Sobic003G064800 Sobic004G306900--Sobic007G086300 Sobic003G000100 Sobic003G000100 Sobic004G306900--Sobic003G000100 Sobic004G106100 Sobic004G106100 Sobic004G306900--Sobic004G106100 Sobic006G019700 Sobic006G019700 Sobic004G306900--Sobic006G019700 Sobic004G306900--Sobic003G319400 Sobic010G152400 Sobic010G152400 Sobic004G306900--Sobic010G152400 Sobic004G322100 Sobic004G322100 Sobic004G306900--Sobic004G322100 Sobic001G507100--Sobic001G414800 Sobic001G507100--Sobic006G106900 Sobic001G507100--Sobic003G064800 Sobic001G507100--Sobic004G306900 Sobic001G507100--Sobic007G086300 Sobic001G507100--Sobic004G106100 Sobic006G133200 Sobic006G133200 Sobic001G507100--Sobic006G133200 Sobic001G507100--Sobic003G319400 Sobic001G507100--Sobic005G202300 Sobic009G181600--Sobic006G106900 Sobic009G181600--Sobic003G319400 Sobic009G181600--Sobic005G202300 Sobic006G092700 Sobic006G092700 Sobic009G181600--Sobic006G092700 Sobic008G164450 Sobic008G164450 Sobic009G181600--Sobic008G164450 Sobic002G343100 Sobic002G343100 Sobic009G181600--Sobic002G343100 Sobic009G181600--Sobic004G029400 Sobic007G037600 Sobic007G037600 Sobic009G181600--Sobic007G037600 Sobic009G181600--Sobic010G031700 Sobic001G438200--Sobic003G064800 Sobic001G438200--Sobic002G255000 Sobic001G438200--Sobic003G140700 Sobic001G438200--Sobic003G319400 Sobic009G219200 Sobic009G219200 Sobic001G438200--Sobic009G219200 Sobic001G438200--Sobic006G106900 Sobic001G438200--Sobic004G306900 Sobic006G273300 Sobic006G273300 Sobic001G438200--Sobic006G273300 Sobic001G438200--Sobic004G322100 Sobic003G280000--Sobic005G202300 Sobic003G280000--Sobic003G353200 Sobic003G280000--Sobic006G106900 Sobic003G280000--Sobic003G319400 Sobic003G280000--Sobic010G031700 Sobic003G280000--Sobic003G053200 Sobic003G257400 Sobic003G257400 Sobic003G280000--Sobic003G257400 Sobic003G280000--Sobic009G181600 Sobic001G218400 Sobic001G218400 Sobic003G280000--Sobic001G218400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.