Gene annotation
Transcriptome id Sobic.003G280000.1
Synonym MYB37, ATMYB37, Sb03g033160, RAX1
Functional annotation myb-like DNA-binding domain containing protein, putative, expressed
UniProt C5XID7
Pfam PF00249
Panther DB PTHR10641 PTHR10641:SF566
NCBI CDD -
KEGG Orthology K09422; transcription factor MYB, plant
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G36890 : Duplicated homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os01g52410.1 : myb-like DNA-binding domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052072 , Zm00025a038992 , Zm00025a028009 , Zm00025a038844 , Zm00025a027749 , Zm00025a058059 , Zm00025a015262 , Zm00025a044484
Brachypodium PNT72738 , KQJ95786 , KQK02077 , KQK05002 , KQK09222 , KQJ91657 , KQJ90325
Barley HORVU7Hr1G096190.1 , HORVU7Hr1G096190.2 , HORVU6Hr1G083250.1 , HORVU6Hr1G083250.2 , HORVU6Hr1G083250.3 , HORVU4Hr1G055680.1 , HORVU5Hr1G063410.2 , HORVU5Hr1G063410.1 , HORVU3Hr1G063460.1 , HORVU3Hr1G063460.2 , HORVU3Hr1G063460.3 , HORVU3Hr1G063460.4 , HORVU3Hr1G063460.5 , HORVU3Hr1G063460.6 , HORVU3Hr1G063460.7 , HORVU4Hr1G055640.1 , HORVU1Hr1G084170.3 , HORVU1Hr1G084170.1 , HORVU1Hr1G084170.7 , HORVU1Hr1G084170.6 , HORVU1Hr1G084170.5 , HORVU1Hr1G084170.4 , HORVU1Hr1G084170.8 , HORVU1Hr1G061220.1
Wheat TraesCS1A02G252600 , TraesCS7D02G407500 , TraesCS3B02G320800 , TraesCS6A02G344700 , TraesCS4D02G192400 , TraesCS1B02G265400 , TraesCS5D02G225800 , TraesCS6B02G377400 , TraesCS5A02G217900 , TraesCS3D02G286300 , TraesCS3D02G265100 , TraesCS6D02G327300 , TraesCS7B02G314200 , TraesCS1D02G387100 , TraesCS1B02G401700 , TraesCS3A02G286600 , TraesCS4B02G191200 , TraesCS5B02G216900 , TraesCS3B02G298200 , TraesCS1A02G379700 , TraesCS7A02G414300
Populus PNS98837 , PNT31233


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
2 Sobic.003G353200 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Laccase 2 LAC2 (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
3 Sobic.006G106900 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
4 Sobic.003G319400 receptor protein kinase, putative, expressed -
5 Sobic.010G031700 thaumatin, putative, expressed -
6 Sobic.003G053200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.003G257400 "BG3(Ortholog in rice:Xiao et al., 20018)"(PubMedID : 31659870)@purine permease, putative, expressed -
8 Sobic.009G181600 indole-3-acetate beta-glucosyltransferase, putative, expressed -
9 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
10 Sobic.001G014700 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
11 Sobic.006G003100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1295 domain containing protein, putative, expressed -
12 Sobic.007G037600 C4-dicarboxylate transporter/malic acid transport protein, expressed -
13 Sobic.003G000100 STIGL1 - Stigma-specific Stig1 family protein precursor, expressed -
14 Sobic.007G086300 glycosyl hydrolases family 16, putative, expressed -
15 Sobic.004G106100 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.003G441800 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
17 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
18 Sobic.004G121600 expansin precursor, putative, expressed -
19 Sobic.003G441700 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
20 Sobic.005G119900 reticuline oxidase-like protein precursor, putative, expressed -


Gene co-expression network
sample Sobic003G280000 Sobic003G280000 Sobic005G202300 Sobic005G202300 Sobic003G280000--Sobic005G202300 Sobic003G353200 Sobic003G353200 Sobic003G280000--Sobic003G353200 Sobic006G106900 Sobic006G106900 Sobic003G280000--Sobic006G106900 Sobic003G319400 Sobic003G319400 Sobic003G280000--Sobic003G319400 Sobic010G031700 Sobic010G031700 Sobic003G280000--Sobic010G031700 Sobic003G053200 Sobic003G053200 Sobic003G280000--Sobic003G053200 Sobic003G257400 Sobic003G257400 Sobic003G280000--Sobic003G257400 Sobic009G181600 Sobic009G181600 Sobic003G280000--Sobic009G181600 Sobic001G218400 Sobic001G218400 Sobic003G280000--Sobic001G218400 Sobic005G202300--Sobic006G106900 Sobic005G202300--Sobic003G319400 Sobic005G202300--Sobic003G280000 Sobic005G202300--Sobic009G181600 Sobic005G202300--Sobic003G053200 Sobic005G202300--Sobic010G031700 Sobic005G202300--Sobic003G353200 Sobic004G029400 Sobic004G029400 Sobic005G202300--Sobic004G029400 Sobic001G058300 Sobic001G058300 Sobic005G202300--Sobic001G058300 Sobic007G037600 Sobic007G037600 Sobic003G353200--Sobic007G037600 Sobic003G353200--Sobic003G280000 Sobic002G146000 Sobic002G146000 Sobic003G353200--Sobic002G146000 Sobic003G353200--Sobic010G031700 Sobic003G353200--Sobic005G202300 Sobic003G053600 Sobic003G053600 Sobic003G353200--Sobic003G053600 Sobic003G353200--Sobic006G106900 Sobic003G353200--Sobic001G218400 Sobic009G162300 Sobic009G162300 Sobic003G353200--Sobic009G162300 Sobic006G106900--Sobic003G319400 Sobic006G106900--Sobic005G202300 Sobic003G064800 Sobic003G064800 Sobic006G106900--Sobic003G064800 Sobic001G414800 Sobic001G414800 Sobic006G106900--Sobic001G414800 Sobic004G306900 Sobic004G306900 Sobic006G106900--Sobic004G306900 Sobic001G507100 Sobic001G507100 Sobic006G106900--Sobic001G507100 Sobic006G106900--Sobic009G181600 Sobic001G438200 Sobic001G438200 Sobic006G106900--Sobic001G438200 Sobic006G106900--Sobic003G280000 Sobic003G319400--Sobic006G106900 Sobic003G319400--Sobic005G202300 Sobic003G319400--Sobic004G306900 Sobic003G319400--Sobic001G438200 Sobic003G319400--Sobic009G181600 Sobic007G086300 Sobic007G086300 Sobic003G319400--Sobic007G086300 Sobic003G282200 Sobic003G282200 Sobic003G319400--Sobic003G282200 Sobic003G319400--Sobic003G064800 Sobic003G319400--Sobic003G280000 Sobic010G031700--Sobic003G053200 Sobic010G031700--Sobic007G037600 Sobic003G441800 Sobic003G441800 Sobic010G031700--Sobic003G441800 Sobic004G106100 Sobic004G106100 Sobic010G031700--Sobic004G106100 Sobic010G031700--Sobic004G029400 Sobic006G003100 Sobic006G003100 Sobic010G031700--Sobic006G003100 Sobic006G205700 Sobic006G205700 Sobic010G031700--Sobic006G205700 Sobic002G233200 Sobic002G233200 Sobic010G031700--Sobic002G233200 Sobic010G031700--Sobic003G353200 Sobic003G053200--Sobic003G441800 Sobic003G441700 Sobic003G441700 Sobic003G053200--Sobic003G441700 Sobic001G301000 Sobic001G301000 Sobic003G053200--Sobic001G301000 Sobic004G121600 Sobic004G121600 Sobic003G053200--Sobic004G121600 Sobic003G053200--Sobic010G031700 Sobic005G119900 Sobic005G119900 Sobic003G053200--Sobic005G119900 Sobic003G053200--Sobic004G029400 Sobic001G231800 Sobic001G231800 Sobic003G053200--Sobic001G231800 Sobic003G053200--Sobic007G037600 Sobic003G000100 Sobic003G000100 Sobic003G257400--Sobic003G000100 Sobic003G257400--Sobic007G086300 Sobic003G257400--Sobic004G106100 Sobic003G257400--Sobic006G106900 Sobic003G257400--Sobic001G414800 Sobic003G257400--Sobic003G353200 Sobic003G257400--Sobic003G280000 Sobic003G257400--Sobic006G003100 Sobic003G257400--Sobic004G306900 Sobic009G181600--Sobic006G106900 Sobic009G181600--Sobic003G319400 Sobic009G181600--Sobic005G202300 Sobic006G092700 Sobic006G092700 Sobic009G181600--Sobic006G092700 Sobic008G164450 Sobic008G164450 Sobic009G181600--Sobic008G164450 Sobic002G343100 Sobic002G343100 Sobic009G181600--Sobic002G343100 Sobic009G181600--Sobic004G029400 Sobic009G181600--Sobic007G037600 Sobic009G181600--Sobic010G031700 Sobic006G097900 Sobic006G097900 Sobic001G218400--Sobic006G097900 Sobic001G218400--Sobic004G121600 Sobic001G181600 Sobic001G181600 Sobic001G218400--Sobic001G181600 Sobic001G218400--Sobic003G441800 Sobic010G191600 Sobic010G191600 Sobic001G218400--Sobic010G191600 Sobic003G154500 Sobic003G154500 Sobic001G218400--Sobic003G154500 Sobic001G218400--Sobic003G441700 Sobic010G010000 Sobic010G010000 Sobic001G218400--Sobic010G010000 Sobic001G218400--Sobic005G119900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.