Gene annotation
Transcriptome id Sobic.006G003100.1
Synonym Sb06g000480
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
DUF1295 domain containing protein, putative, expressed
UniProt C5YB98
Pfam PF04191
Panther DB PTHR32251 PTHR32251:SF14
NCBI CDD KOG4650; Predicted steroid reductase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G46890 : Protein of unknown function (DUF1295)
RAP-DB (Rice) LOC_Os04g01510.1 : DUF1295 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a055501
Brachypodium KQJ81684
Barley HORVU2Hr1G005680.1 , HORVU2Hr1G005680.3 , HORVU2Hr1G005680.2
Wheat TraesCS2B02G051300 , TraesCS2A02G038000 , TraesCS2D02G037000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G000100 STIGL1 - Stigma-specific Stig1 family protein precursor, expressed -
2 Sobic.010G152400 glycosyltransferase, putative, expressed -
3 Sobic.010G031700 thaumatin, putative, expressed -
4 Sobic.004G106100 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.007G086300 glycosyl hydrolases family 16, putative, expressed -
6 Sobic.002G233200 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.004G322100 hypro1, putative, expressed -
8 Sobic.004G306900 amino acid transporter, putative, expressed -
9 Sobic.007G158800 patatin, putative, expressed -
10 Sobic.003G353200 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Laccase 2 LAC2 (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
11 Sobic.003G257400 "BG3(Ortholog in rice:Xiao et al., 20018)"(PubMedID : 31659870)@purine permease, putative, expressed -
12 Sobic.002G146000 "Localized in cytoplasm, involved in the process of drought defense"(PubMedID : 27231650)@dehydrogenase, putative, expressed K09753: cinnamoyl-CoA reductase
13 Sobic.001G502000 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
14 Sobic.003G319400 receptor protein kinase, putative, expressed -
15 Sobic.001G229000 xyloglucan galactosyltransferase KATAMARI1, putative, expressed -
16 Sobic.001G438200 expressed protein -
17 Sobic.004G271800 WRKY66, expressed -
18 Sobic.003G280000 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
20 Sobic.006G106900 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G003100 Sobic006G003100 Sobic003G000100 Sobic003G000100 Sobic006G003100--Sobic003G000100 Sobic010G152400 Sobic010G152400 Sobic006G003100--Sobic010G152400 Sobic010G031700 Sobic010G031700 Sobic006G003100--Sobic010G031700 Sobic004G106100 Sobic004G106100 Sobic006G003100--Sobic004G106100 Sobic007G086300 Sobic007G086300 Sobic006G003100--Sobic007G086300 Sobic002G233200 Sobic002G233200 Sobic006G003100--Sobic002G233200 Sobic004G322100 Sobic004G322100 Sobic006G003100--Sobic004G322100 Sobic004G306900 Sobic004G306900 Sobic006G003100--Sobic004G306900 Sobic007G158800 Sobic007G158800 Sobic006G003100--Sobic007G158800 Sobic003G000100--Sobic010G152400 Sobic003G000100--Sobic004G322100 Sobic003G000100--Sobic006G003100 Sobic003G000100--Sobic004G306900 Sobic006G092700 Sobic006G092700 Sobic003G000100--Sobic006G092700 Sobic003G000100--Sobic004G106100 Sobic004G271800 Sobic004G271800 Sobic003G000100--Sobic004G271800 Sobic003G240400 Sobic003G240400 Sobic003G000100--Sobic003G240400 Sobic003G000100--Sobic007G086300 Sobic010G152400--Sobic003G000100 Sobic010G152400--Sobic004G322100 Sobic010G152400--Sobic003G240400 Sobic010G152400--Sobic004G306900 Sobic010G152400--Sobic006G092700 Sobic010G082000 Sobic010G082000 Sobic010G152400--Sobic010G082000 Sobic010G152400--Sobic006G003100 Sobic010G152400--Sobic004G106100 Sobic006G019700 Sobic006G019700 Sobic010G152400--Sobic006G019700 Sobic003G053200 Sobic003G053200 Sobic010G031700--Sobic003G053200 Sobic007G037600 Sobic007G037600 Sobic010G031700--Sobic007G037600 Sobic003G441800 Sobic003G441800 Sobic010G031700--Sobic003G441800 Sobic010G031700--Sobic004G106100 Sobic004G029400 Sobic004G029400 Sobic010G031700--Sobic004G029400 Sobic010G031700--Sobic006G003100 Sobic006G205700 Sobic006G205700 Sobic010G031700--Sobic006G205700 Sobic010G031700--Sobic002G233200 Sobic003G353200 Sobic003G353200 Sobic010G031700--Sobic003G353200 Sobic004G106100--Sobic007G086300 Sobic004G106100--Sobic006G205700 Sobic004G106100--Sobic004G306900 Sobic004G106100--Sobic003G000100 Sobic004G106100--Sobic010G031700 Sobic003G282300 Sobic003G282300 Sobic004G106100--Sobic003G282300 Sobic002G391400 Sobic002G391400 Sobic004G106100--Sobic002G391400 Sobic004G106100--Sobic002G233200 Sobic004G106100--Sobic010G152400 Sobic007G086300--Sobic004G106100 Sobic007G086300--Sobic004G306900 Sobic003G064800 Sobic003G064800 Sobic007G086300--Sobic003G064800 Sobic007G086300--Sobic006G205700 Sobic007G086300--Sobic003G000100 Sobic002G392100 Sobic002G392100 Sobic007G086300--Sobic002G392100 Sobic001G319300 Sobic001G319300 Sobic007G086300--Sobic001G319300 Sobic008G034900 Sobic008G034900 Sobic007G086300--Sobic008G034900 Sobic003G319400 Sobic003G319400 Sobic007G086300--Sobic003G319400 Sobic002G233200--Sobic004G106100 Sobic002G233200--Sobic010G031700 Sobic002G233200--Sobic003G000100 Sobic002G233200--Sobic006G003100 Sobic002G233200--Sobic007G086300 Sobic002G233200--Sobic003G240400 Sobic002G233200--Sobic010G152400 Sobic002G233200--Sobic006G205700 Sobic002G146000 Sobic002G146000 Sobic002G233200--Sobic002G146000 Sobic004G322100--Sobic003G000100 Sobic004G322100--Sobic010G152400 Sobic003G140700 Sobic003G140700 Sobic004G322100--Sobic003G140700 Sobic004G323300 Sobic004G323300 Sobic004G322100--Sobic004G323300 Sobic004G322100--Sobic004G306900 Sobic004G322100--Sobic006G019700 Sobic004G029100 Sobic004G029100 Sobic004G322100--Sobic004G029100 Sobic006G028500 Sobic006G028500 Sobic004G322100--Sobic006G028500 Sobic004G110700 Sobic004G110700 Sobic004G322100--Sobic004G110700 Sobic004G306900--Sobic006G028500 Sobic004G306900--Sobic003G064800 Sobic004G306900--Sobic007G086300 Sobic004G306900--Sobic003G000100 Sobic004G306900--Sobic004G106100 Sobic004G306900--Sobic006G019700 Sobic004G306900--Sobic003G319400 Sobic004G306900--Sobic010G152400 Sobic004G306900--Sobic004G322100 Sobic001G502000 Sobic001G502000 Sobic007G158800--Sobic001G502000 Sobic001G229000 Sobic001G229000 Sobic007G158800--Sobic001G229000 Sobic002G183700 Sobic002G183700 Sobic007G158800--Sobic002G183700 Sobic006G089000 Sobic006G089000 Sobic007G158800--Sobic006G089000 Sobic005G222500 Sobic005G222500 Sobic007G158800--Sobic005G222500 Sobic007G158800--Sobic004G029100 Sobic007G158800--Sobic003G000100 Sobic007G158800--Sobic006G003100 Sobic007G158800--Sobic007G086300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.