Gene annotation
Transcriptome id Sobic.004G306900.1
Synonym Sb04g033960, LHT1
Functional annotation amino acid transporter, putative, expressed
UniProt C5XSS6
Pfam PF03222
Panther DB PTHR22950 PTHR22950:SF235
NCBI CDD KOG1303; Amino acid transporters
KEGG Orthology -
Gene Ontology GO:0003333; amino acid transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G40780 : lysine histidine transporter 1
RAP-DB (Rice) LOC_Os08g03350.1 : amino acid transporter, putative, expressed
MaizeGDB (Corn) Zm00025a040346 , Zm00025a040345 , Zm00025a040343 , Zm00025a030209 , Zm00025a040337 , Zm00025a054737 , Zm00025a040338 , Zm00025a040344 , Zm00025a009656
Brachypodium PNT63500 , PNT63501 , PNT76283 , KQJ94928 , KQJ94929
Barley HORVU1Hr1G011920.2 , HORVU1Hr1G011920.1 , HORVU7Hr1G032060.4 , HORVU7Hr1G032060.5 , HORVU7Hr1G032060.2 , HORVU7Hr1G032060.3 , HORVU7Hr1G032060.1 , HORVU7Hr1G074640.10 , HORVU2Hr1G123160.3 , HORVU7Hr1G074640.12 , HORVU7Hr1G074640.13 , HORVU7Hr1G074640.11 , HORVU7Hr1G074640.16 , HORVU7Hr1G074640.17 , HORVU7Hr1G074640.14 , HORVU7Hr1G074640.15 , HORVU7Hr1G074640.18 , HORVU7Hr1G074640.19 , HORVU7Hr1G074640.2 , HORVU7Hr1G074640.3 , HORVU7Hr1G074640.4 , HORVU7Hr1G074640.5 , HORVU7Hr1G074640.6 , HORVU7Hr1G074640.7 , HORVU7Hr1G074640.23 , HORVU7Hr1G074640.22 , HORVU7Hr1G074640.21 , HORVU7Hr1G074640.27 , HORVU7Hr1G074640.26 , HORVU7Hr1G074640.25 , HORVU7Hr1G074640.24 , HORVU7Hr1G074640.9 , HORVU7Hr1G074660.6 , HORVU7Hr1G074660.7 , HORVU7Hr1G074660.4 , HORVU7Hr1G074660.5 , HORVU7Hr1G074660.2 , HORVU7Hr1G074660.3 , HORVU7Hr1G074660.1 , HORVU7Hr1G074660.8 , HORVU7Hr1G074660.9 , HORVU2Hr1G123160.2 , HORVU2Hr1G123160.1 , HORVU2Hr1G123160.7 , HORVU2Hr1G123160.6 , HORVU2Hr1G123160.5 , HORVU2Hr1G123160.4 , HORVU7Hr1G074660.10 , HORVU7Hr1G074660.11 , HORVU7Hr1G074660.12 , HORVU7Hr1G074640.8
Wheat TraesCS7B02G060400 , TraesCS7D02G309200 , TraesCS7A02G312800 , TraesCS7D02G157000 , TraesCS7A02G313000 , TraesCS7B02G213000 , TraesCS2B02G602449 , TraesCS7A02G156600 , TraesCS7B02G212500 , TraesCS7D02G309400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G028500 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
2 Sobic.003G064800 dirigent, putative, expressed -
3 Sobic.007G086300 glycosyl hydrolases family 16, putative, expressed -
4 Sobic.003G000100 STIGL1 - Stigma-specific Stig1 family protein precursor, expressed -
5 Sobic.004G106100 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.006G019700 transferase family protein, putative, expressed -
7 Sobic.003G319400 receptor protein kinase, putative, expressed -
8 Sobic.010G152400 glycosyltransferase, putative, expressed -
9 Sobic.004G322100 hypro1, putative, expressed -
10 Sobic.006G106900 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
11 Sobic.006G092700 MLO domain containing protein, putative, expressed K08472: mlo protein
12 Sobic.001G238200 expansin precursor, putative, expressed -
13 Sobic.001G438200 expressed protein -
14 Sobic.003G140700 peroxidase precursor, putative, expressed -
15 Sobic.010G082000 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
16 Sobic.003G240400 leaf senescence related protein, putative, expressed -
17 Sobic.002G255000 AIR12, putative, expressed -
18 Sobic.007G100700 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
19 Sobic.010G234500 O-methyltransferase, putative, expressed -
20 Sobic.003G182200 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed -


Gene co-expression network
sample Sobic004G306900 Sobic004G306900 Sobic006G028500 Sobic006G028500 Sobic004G306900--Sobic006G028500 Sobic003G064800 Sobic003G064800 Sobic004G306900--Sobic003G064800 Sobic007G086300 Sobic007G086300 Sobic004G306900--Sobic007G086300 Sobic003G000100 Sobic003G000100 Sobic004G306900--Sobic003G000100 Sobic004G106100 Sobic004G106100 Sobic004G306900--Sobic004G106100 Sobic006G019700 Sobic006G019700 Sobic004G306900--Sobic006G019700 Sobic003G319400 Sobic003G319400 Sobic004G306900--Sobic003G319400 Sobic010G152400 Sobic010G152400 Sobic004G306900--Sobic010G152400 Sobic004G322100 Sobic004G322100 Sobic004G306900--Sobic004G322100 Sobic006G028500--Sobic004G306900 Sobic006G028500--Sobic006G019700 Sobic004G110700 Sobic004G110700 Sobic006G028500--Sobic004G110700 Sobic001G229000 Sobic001G229000 Sobic006G028500--Sobic001G229000 Sobic003G240400 Sobic003G240400 Sobic006G028500--Sobic003G240400 Sobic010G082000 Sobic010G082000 Sobic006G028500--Sobic010G082000 Sobic006G028500--Sobic004G322100 Sobic006G028500--Sobic010G152400 Sobic006G028500--Sobic003G000100 Sobic005G127400 Sobic005G127400 Sobic003G064800--Sobic005G127400 Sobic002G255000 Sobic002G255000 Sobic003G064800--Sobic002G255000 Sobic003G064800--Sobic004G306900 Sobic001G438200 Sobic001G438200 Sobic003G064800--Sobic001G438200 Sobic006G106900 Sobic006G106900 Sobic003G064800--Sobic006G106900 Sobic001G238200 Sobic001G238200 Sobic003G064800--Sobic001G238200 Sobic003G140700 Sobic003G140700 Sobic003G064800--Sobic003G140700 Sobic003G064800--Sobic007G086300 Sobic010G234500 Sobic010G234500 Sobic003G064800--Sobic010G234500 Sobic007G086300--Sobic004G106100 Sobic007G086300--Sobic004G306900 Sobic007G086300--Sobic003G064800 Sobic006G205700 Sobic006G205700 Sobic007G086300--Sobic006G205700 Sobic007G086300--Sobic003G000100 Sobic002G392100 Sobic002G392100 Sobic007G086300--Sobic002G392100 Sobic001G319300 Sobic001G319300 Sobic007G086300--Sobic001G319300 Sobic008G034900 Sobic008G034900 Sobic007G086300--Sobic008G034900 Sobic007G086300--Sobic003G319400 Sobic003G000100--Sobic010G152400 Sobic003G000100--Sobic004G322100 Sobic006G003100 Sobic006G003100 Sobic003G000100--Sobic006G003100 Sobic003G000100--Sobic004G306900 Sobic006G092700 Sobic006G092700 Sobic003G000100--Sobic006G092700 Sobic003G000100--Sobic004G106100 Sobic004G271800 Sobic004G271800 Sobic003G000100--Sobic004G271800 Sobic003G000100--Sobic003G240400 Sobic003G000100--Sobic007G086300 Sobic004G106100--Sobic007G086300 Sobic004G106100--Sobic006G205700 Sobic004G106100--Sobic004G306900 Sobic004G106100--Sobic003G000100 Sobic010G031700 Sobic010G031700 Sobic004G106100--Sobic010G031700 Sobic003G282300 Sobic003G282300 Sobic004G106100--Sobic003G282300 Sobic002G391400 Sobic002G391400 Sobic004G106100--Sobic002G391400 Sobic002G233200 Sobic002G233200 Sobic004G106100--Sobic002G233200 Sobic004G106100--Sobic010G152400 Sobic006G019700--Sobic004G306900 Sobic003G182200 Sobic003G182200 Sobic006G019700--Sobic003G182200 Sobic006G019700--Sobic006G028500 Sobic006G019700--Sobic004G322100 Sobic006G019700--Sobic010G082000 Sobic006G019700--Sobic006G092700 Sobic006G019700--Sobic010G152400 Sobic006G135300 Sobic006G135300 Sobic006G019700--Sobic006G135300 Sobic006G019700--Sobic003G000100 Sobic003G319400--Sobic006G106900 Sobic005G202300 Sobic005G202300 Sobic003G319400--Sobic005G202300 Sobic003G319400--Sobic004G306900 Sobic003G319400--Sobic001G438200 Sobic009G181600 Sobic009G181600 Sobic003G319400--Sobic009G181600 Sobic003G319400--Sobic007G086300 Sobic003G282200 Sobic003G282200 Sobic003G319400--Sobic003G282200 Sobic003G319400--Sobic003G064800 Sobic003G280000 Sobic003G280000 Sobic003G319400--Sobic003G280000 Sobic010G152400--Sobic003G000100 Sobic010G152400--Sobic004G322100 Sobic010G152400--Sobic003G240400 Sobic010G152400--Sobic004G306900 Sobic010G152400--Sobic006G092700 Sobic010G152400--Sobic010G082000 Sobic010G152400--Sobic006G003100 Sobic010G152400--Sobic004G106100 Sobic010G152400--Sobic006G019700 Sobic004G322100--Sobic003G000100 Sobic004G322100--Sobic010G152400 Sobic004G322100--Sobic003G140700 Sobic004G323300 Sobic004G323300 Sobic004G322100--Sobic004G323300 Sobic004G322100--Sobic004G306900 Sobic004G322100--Sobic006G019700 Sobic004G029100 Sobic004G029100 Sobic004G322100--Sobic004G029100 Sobic004G322100--Sobic006G028500 Sobic004G322100--Sobic004G110700
Octagon: transcription factors


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