Gene annotation
Transcriptome id Sobic.002G233200.1
Synonym Sb02g027240, UCC1
Functional annotation plastocyanin-like domain containing protein, putative, expressed
UniProt C5X317
Pfam PF02298
Panther DB PTHR33021 PTHR33021:SF65
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT2G32300 : uclacyanin 1
RAP-DB (Rice) LOC_Os09g29390.1 : plastocyanin-like domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a020907
Brachypodium KQJ90590
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G106100 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.010G031700 thaumatin, putative, expressed -
3 Sobic.003G000100 STIGL1 - Stigma-specific Stig1 family protein precursor, expressed -
4 Sobic.006G003100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1295 domain containing protein, putative, expressed -
5 Sobic.007G086300 glycosyl hydrolases family 16, putative, expressed -
6 Sobic.003G240400 leaf senescence related protein, putative, expressed -
7 Sobic.010G152400 glycosyltransferase, putative, expressed -
8 Sobic.006G205700 glycosyl hydrolases family 16, putative, expressed -
9 Sobic.002G146000 "Localized in cytoplasm, involved in the process of drought defense"(PubMedID : 27231650)@dehydrogenase, putative, expressed K09753: cinnamoyl-CoA reductase
10 Sobic.003G095100 glycosyltransferase protein, putative, expressed -
11 Sobic.003G282300 POEI51 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
12 Sobic.004G306900 amino acid transporter, putative, expressed -
13 Sobic.006G085700 OsPDIL1-2 protein disulfide isomerase PDIL1-2, expressed K09580: PDIA1, protein disulfide-isomerase A1
14 Sobic.007G037600 C4-dicarboxylate transporter/malic acid transport protein, expressed -
15 Sobic.007G158800 patatin, putative, expressed -
16 Sobic.007G090600 CSLC3 - cellulose synthase-like family C, expressed -
17 Sobic.006G031100 CAP (Cysteine-rich secretory proteins("PubMedID : 26759170,PubMedID : 24597475")@SCP-like extracellular protein, expressed -
18 Sobic.004G029400 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
19 Sobic.003G441800 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
20 Sobic.003G053200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic002G233200 Sobic002G233200 Sobic004G106100 Sobic004G106100 Sobic002G233200--Sobic004G106100 Sobic010G031700 Sobic010G031700 Sobic002G233200--Sobic010G031700 Sobic003G000100 Sobic003G000100 Sobic002G233200--Sobic003G000100 Sobic006G003100 Sobic006G003100 Sobic002G233200--Sobic006G003100 Sobic007G086300 Sobic007G086300 Sobic002G233200--Sobic007G086300 Sobic003G240400 Sobic003G240400 Sobic002G233200--Sobic003G240400 Sobic010G152400 Sobic010G152400 Sobic002G233200--Sobic010G152400 Sobic006G205700 Sobic006G205700 Sobic002G233200--Sobic006G205700 Sobic002G146000 Sobic002G146000 Sobic002G233200--Sobic002G146000 Sobic004G106100--Sobic007G086300 Sobic004G106100--Sobic006G205700 Sobic004G306900 Sobic004G306900 Sobic004G106100--Sobic004G306900 Sobic004G106100--Sobic003G000100 Sobic004G106100--Sobic010G031700 Sobic003G282300 Sobic003G282300 Sobic004G106100--Sobic003G282300 Sobic002G391400 Sobic002G391400 Sobic004G106100--Sobic002G391400 Sobic004G106100--Sobic002G233200 Sobic004G106100--Sobic010G152400 Sobic003G053200 Sobic003G053200 Sobic010G031700--Sobic003G053200 Sobic007G037600 Sobic007G037600 Sobic010G031700--Sobic007G037600 Sobic003G441800 Sobic003G441800 Sobic010G031700--Sobic003G441800 Sobic010G031700--Sobic004G106100 Sobic004G029400 Sobic004G029400 Sobic010G031700--Sobic004G029400 Sobic010G031700--Sobic006G003100 Sobic010G031700--Sobic006G205700 Sobic010G031700--Sobic002G233200 Sobic003G353200 Sobic003G353200 Sobic010G031700--Sobic003G353200 Sobic003G000100--Sobic010G152400 Sobic004G322100 Sobic004G322100 Sobic003G000100--Sobic004G322100 Sobic003G000100--Sobic006G003100 Sobic003G000100--Sobic004G306900 Sobic006G092700 Sobic006G092700 Sobic003G000100--Sobic006G092700 Sobic003G000100--Sobic004G106100 Sobic004G271800 Sobic004G271800 Sobic003G000100--Sobic004G271800 Sobic003G000100--Sobic003G240400 Sobic003G000100--Sobic007G086300 Sobic006G003100--Sobic003G000100 Sobic006G003100--Sobic010G152400 Sobic006G003100--Sobic010G031700 Sobic006G003100--Sobic004G106100 Sobic006G003100--Sobic007G086300 Sobic006G003100--Sobic002G233200 Sobic006G003100--Sobic004G322100 Sobic006G003100--Sobic004G306900 Sobic007G158800 Sobic007G158800 Sobic006G003100--Sobic007G158800 Sobic007G086300--Sobic004G106100 Sobic007G086300--Sobic004G306900 Sobic003G064800 Sobic003G064800 Sobic007G086300--Sobic003G064800 Sobic007G086300--Sobic006G205700 Sobic007G086300--Sobic003G000100 Sobic002G392100 Sobic002G392100 Sobic007G086300--Sobic002G392100 Sobic001G319300 Sobic001G319300 Sobic007G086300--Sobic001G319300 Sobic008G034900 Sobic008G034900 Sobic007G086300--Sobic008G034900 Sobic003G319400 Sobic003G319400 Sobic007G086300--Sobic003G319400 Sobic010G082000 Sobic010G082000 Sobic003G240400--Sobic010G082000 Sobic003G215300 Sobic003G215300 Sobic003G240400--Sobic003G215300 Sobic001G263300 Sobic001G263300 Sobic003G240400--Sobic001G263300 Sobic006G196400 Sobic006G196400 Sobic003G240400--Sobic006G196400 Sobic007G090600 Sobic007G090600 Sobic003G240400--Sobic007G090600 Sobic003G240400--Sobic010G152400 Sobic006G028500 Sobic006G028500 Sobic003G240400--Sobic006G028500 Sobic003G240400--Sobic003G000100 Sobic008G035800 Sobic008G035800 Sobic003G240400--Sobic008G035800 Sobic010G152400--Sobic003G000100 Sobic010G152400--Sobic004G322100 Sobic010G152400--Sobic003G240400 Sobic010G152400--Sobic004G306900 Sobic010G152400--Sobic006G092700 Sobic010G152400--Sobic010G082000 Sobic010G152400--Sobic006G003100 Sobic010G152400--Sobic004G106100 Sobic006G019700 Sobic006G019700 Sobic010G152400--Sobic006G019700 Sobic006G205700--Sobic002G391400 Sobic006G205700--Sobic003G441800 Sobic006G205700--Sobic004G106100 Sobic003G167300 Sobic003G167300 Sobic006G205700--Sobic003G167300 Sobic010G241900 Sobic010G241900 Sobic006G205700--Sobic010G241900 Sobic005G046400 Sobic005G046400 Sobic006G205700--Sobic005G046400 Sobic007G206800 Sobic007G206800 Sobic006G205700--Sobic007G206800 Sobic003G441601 Sobic003G441601 Sobic006G205700--Sobic003G441601 Sobic003G095100 Sobic003G095100 Sobic006G205700--Sobic003G095100 Sobic007G073000 Sobic007G073000 Sobic002G146000--Sobic007G073000 Sobic002G146000--Sobic006G092700 Sobic002G146000--Sobic007G037600 Sobic002G146000--Sobic003G353200 Sobic002G146000--Sobic003G000100 Sobic006G085700 Sobic006G085700 Sobic002G146000--Sobic006G085700 Sobic002G146000--Sobic010G031700 Sobic002G146000--Sobic003G215300 Sobic002G146000--Sobic004G106100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.