Gene annotation
Transcriptome id Sobic.001G014700.1
Synonym Sb01g001430
Functional annotation glucan endo-1,3-beta-glucosidase precursor, putative, expressed
UniProt C5WSY5
Pfam PF07983 PF00332
Panther DB PTHR32227 PTHR32227:SF66
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT3G07320 : O-Glycosyl hydrolases family 17 protein
RAP-DB (Rice) LOC_Os03g62860.1 : glucan endo-1,3-beta-glucosidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a012808
Brachypodium PNT61212
Barley HORVU5Hr1G095350.1 , HORVU5Hr1G095350.2 , HORVU5Hr1G095430.1 , HORVU5Hr1G095380.2 , HORVU5Hr1G095380.1
Wheat TraesCS5B02G395500 , TraesCS1A02G312700 , TraesCS1A02G312700 , TraesCS1D02G312800 , TraesCS1D02G312800 , TraesCS5A02G390600 , TraesCS5D02G400400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G280000 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
2 Sobic.001G301000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expansin precursor, putative, expressed -
3 Sobic.002G366200 NAD dependent epimerase/dehydratase family protein, putative, expressed -
4 Sobic.010G147200 aluminum-activated malate transporter, putative, expressed -
5 Sobic.005G119900 reticuline oxidase-like protein precursor, putative, expressed -
6 Sobic.003G353200 similar to Putative laccase(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Laccase 2 LAC2 (Os)(PubMedID : 27208977)@laccase precursor protein, putative, expressed K05909: laccase
7 Sobic.005G202300 integral membrane protein TIGR01569 containing protein, expressed -
8 Sobic.008G164450 - -
9 Sobic.008G010500 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
11 Sobic.004G121600 expansin precursor, putative, expressed -
12 Sobic.010G031700 thaumatin, putative, expressed -
13 Sobic.002G385500 ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
14 Sobic.004G029400 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
15 Sobic.007G037600 C4-dicarboxylate transporter/malic acid transport protein, expressed -
16 Sobic.001G539200 expressed protein -
17 Sobic.006G003100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1295 domain containing protein, putative, expressed -
18 Sobic.006G097900 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
19 Sobic.003G053200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.004G106100 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic001G014700 Sobic001G014700 Sobic003G280000 Sobic003G280000 Sobic001G014700--Sobic003G280000 Sobic001G301000 Sobic001G301000 Sobic001G014700--Sobic001G301000 Sobic002G366200 Sobic002G366200 Sobic001G014700--Sobic002G366200 Sobic010G147200 Sobic010G147200 Sobic001G014700--Sobic010G147200 Sobic005G119900 Sobic005G119900 Sobic001G014700--Sobic005G119900 Sobic003G353200 Sobic003G353200 Sobic001G014700--Sobic003G353200 Sobic005G202300 Sobic005G202300 Sobic001G014700--Sobic005G202300 Sobic008G164450 Sobic008G164450 Sobic001G014700--Sobic008G164450 Sobic008G010500 Sobic008G010500 Sobic001G014700--Sobic008G010500 Sobic003G280000--Sobic005G202300 Sobic003G280000--Sobic003G353200 Sobic006G106900 Sobic006G106900 Sobic003G280000--Sobic006G106900 Sobic003G319400 Sobic003G319400 Sobic003G280000--Sobic003G319400 Sobic010G031700 Sobic010G031700 Sobic003G280000--Sobic010G031700 Sobic003G053200 Sobic003G053200 Sobic003G280000--Sobic003G053200 Sobic003G257400 Sobic003G257400 Sobic003G280000--Sobic003G257400 Sobic009G181600 Sobic009G181600 Sobic003G280000--Sobic009G181600 Sobic001G218400 Sobic001G218400 Sobic003G280000--Sobic001G218400 Sobic001G231800 Sobic001G231800 Sobic001G301000--Sobic001G231800 Sobic001G301000--Sobic008G010500 Sobic004G121600 Sobic004G121600 Sobic001G301000--Sobic004G121600 Sobic003G441700 Sobic003G441700 Sobic001G301000--Sobic003G441700 Sobic001G301000--Sobic005G119900 Sobic001G301000--Sobic003G053200 Sobic010G268700 Sobic010G268700 Sobic001G301000--Sobic010G268700 Sobic010G245400 Sobic010G245400 Sobic001G301000--Sobic010G245400 Sobic006G097900 Sobic006G097900 Sobic001G301000--Sobic006G097900 Sobic002G028632 Sobic002G028632 Sobic002G366200--Sobic002G028632 Sobic003G357700 Sobic003G357700 Sobic002G366200--Sobic003G357700 Sobic007G177400 Sobic007G177400 Sobic002G366200--Sobic007G177400 Sobic003G443700 Sobic003G443700 Sobic002G366200--Sobic003G443700 Sobic002G025500 Sobic002G025500 Sobic002G366200--Sobic002G025500 Sobic007G064500 Sobic007G064500 Sobic002G366200--Sobic007G064500 Sobic002G366200--Sobic008G010500 Sobic005G216400 Sobic005G216400 Sobic002G366200--Sobic005G216400 Sobic002G366200--Sobic005G119900 Sobic001G379400 Sobic001G379400 Sobic010G147200--Sobic001G379400 Sobic010G147200--Sobic001G014700 Sobic006G003100 Sobic006G003100 Sobic010G147200--Sobic006G003100 Sobic006G089000 Sobic006G089000 Sobic010G147200--Sobic006G089000 Sobic006G277700 Sobic006G277700 Sobic010G147200--Sobic006G277700 Sobic001G502000 Sobic001G502000 Sobic010G147200--Sobic001G502000 Sobic006G174300 Sobic006G174300 Sobic010G147200--Sobic006G174300 Sobic001G234900 Sobic001G234900 Sobic010G147200--Sobic001G234900 Sobic010G147200--Sobic010G031700 Sobic005G119900--Sobic003G441700 Sobic005G119900--Sobic001G301000 Sobic001G181600 Sobic001G181600 Sobic005G119900--Sobic001G181600 Sobic005G119900--Sobic004G121600 Sobic003G441800 Sobic003G441800 Sobic005G119900--Sobic003G441800 Sobic005G119900--Sobic003G053200 Sobic003G154500 Sobic003G154500 Sobic005G119900--Sobic003G154500 Sobic009G055300 Sobic009G055300 Sobic005G119900--Sobic009G055300 Sobic005G119900--Sobic001G231800 Sobic007G037600 Sobic007G037600 Sobic003G353200--Sobic007G037600 Sobic003G353200--Sobic003G280000 Sobic002G146000 Sobic002G146000 Sobic003G353200--Sobic002G146000 Sobic003G353200--Sobic010G031700 Sobic003G353200--Sobic005G202300 Sobic003G053600 Sobic003G053600 Sobic003G353200--Sobic003G053600 Sobic003G353200--Sobic006G106900 Sobic003G353200--Sobic001G218400 Sobic009G162300 Sobic009G162300 Sobic003G353200--Sobic009G162300 Sobic005G202300--Sobic006G106900 Sobic005G202300--Sobic003G319400 Sobic005G202300--Sobic003G280000 Sobic005G202300--Sobic009G181600 Sobic005G202300--Sobic003G053200 Sobic005G202300--Sobic010G031700 Sobic005G202300--Sobic003G353200 Sobic004G029400 Sobic004G029400 Sobic005G202300--Sobic004G029400 Sobic001G058300 Sobic001G058300 Sobic005G202300--Sobic001G058300 Sobic008G164450--Sobic009G181600 Sobic001G506800 Sobic001G506800 Sobic008G164450--Sobic001G506800 Sobic006G092700 Sobic006G092700 Sobic008G164450--Sobic006G092700 Sobic008G164450--Sobic002G146000 Sobic010G113100 Sobic010G113100 Sobic008G164450--Sobic010G113100 Sobic006G135300 Sobic006G135300 Sobic008G164450--Sobic006G135300 Sobic010G028100 Sobic010G028100 Sobic008G164450--Sobic010G028100 Sobic006G003600 Sobic006G003600 Sobic008G164450--Sobic006G003600 Sobic008G164450--Sobic007G037600 Sobic008G010500--Sobic001G301000 Sobic008G010500--Sobic001G231800 Sobic008G010500--Sobic004G121600 Sobic008G010500--Sobic010G268700 Sobic008G010500--Sobic005G119900 Sobic005G206000 Sobic005G206000 Sobic008G010500--Sobic005G206000 Sobic008G010500--Sobic003G441700 Sobic008G010500--Sobic010G245400 Sobic008G010500--Sobic003G053200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.