Gene annotation
Transcriptome id Sobic.002G385500.1
Synonym Sb02g040170, ATRNS1, RNS1
Functional annotation ribonuclease T2 family domain containing protein, expressed
UniProt C5X369
Pfam PF00445
Panther DB PTHR11240 PTHR11240:SF18
NCBI CDD KOG1642; Ribonuclease, T2 family
KEGG Orthology K01166; ribonuclease T2
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT1G26820 : ribonuclease 3
RAP-DB (Rice) LOC_Os07g43670.1 : ribonuclease T2 family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048847
Brachypodium -
Barley HORVU2Hr1G028430.1 , HORVU2Hr1G037400.1 , HORVU2Hr1G028430.4 , HORVU2Hr1G028430.2
Wheat TraesCS2D02G163300 , TraesCS2A02G157400 , TraesCS2B02G182900 , TraesCS2D02G163200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G000100 STIGL1 - Stigma-specific Stig1 family protein precursor, expressed -
2 Sobic.010G152400 glycosyltransferase, putative, expressed -
3 Sobic.004G029100 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
4 Sobic.009G088500 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.006G003100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1295 domain containing protein, putative, expressed -
6 Sobic.008G019800 - -
7 Sobic.008G068300 transferase family protein, putative, expressed -
8 Sobic.004G322100 hypro1, putative, expressed -
9 Sobic.006G089000 helix-loop-helix DNA-binding protein, putative, expressed -
10 Sobic.001G014700 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
11 Sobic.007G158800 patatin, putative, expressed -
12 Sobic.008G164450 - -
13 Sobic.010G028100 GDP-mannose 4,6 dehydratase 2, putative, expressed K01711: gmd, GDPmannose 4,6-dehydratase
14 Sobic.001G261509 - K09872: aquaporin PIP
15 Sobic.004G119600 expansin precursor, putative, expressed -
16 Sobic.001G502000 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
17 Sobic.006G092700 MLO domain containing protein, putative, expressed K08472: mlo protein
18 Sobic.001G360500 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.001G299100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
20 Sobic.007G158600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@patatin, putative, expressed -


Gene co-expression network
sample Sobic002G385500 Sobic002G385500 Sobic003G000100 Sobic003G000100 Sobic002G385500--Sobic003G000100 Sobic010G152400 Sobic010G152400 Sobic002G385500--Sobic010G152400 Sobic004G029100 Sobic004G029100 Sobic002G385500--Sobic004G029100 Sobic009G088500 Sobic009G088500 Sobic002G385500--Sobic009G088500 Sobic006G003100 Sobic006G003100 Sobic002G385500--Sobic006G003100 Sobic008G019800 Sobic008G019800 Sobic002G385500--Sobic008G019800 Sobic008G068300 Sobic008G068300 Sobic002G385500--Sobic008G068300 Sobic004G322100 Sobic004G322100 Sobic002G385500--Sobic004G322100 Sobic006G089000 Sobic006G089000 Sobic002G385500--Sobic006G089000 Sobic003G000100--Sobic010G152400 Sobic003G000100--Sobic004G322100 Sobic003G000100--Sobic006G003100 Sobic004G306900 Sobic004G306900 Sobic003G000100--Sobic004G306900 Sobic006G092700 Sobic006G092700 Sobic003G000100--Sobic006G092700 Sobic004G106100 Sobic004G106100 Sobic003G000100--Sobic004G106100 Sobic004G271800 Sobic004G271800 Sobic003G000100--Sobic004G271800 Sobic003G240400 Sobic003G240400 Sobic003G000100--Sobic003G240400 Sobic007G086300 Sobic007G086300 Sobic003G000100--Sobic007G086300 Sobic010G152400--Sobic003G000100 Sobic010G152400--Sobic004G322100 Sobic010G152400--Sobic003G240400 Sobic010G152400--Sobic004G306900 Sobic010G152400--Sobic006G092700 Sobic010G082000 Sobic010G082000 Sobic010G152400--Sobic010G082000 Sobic010G152400--Sobic006G003100 Sobic010G152400--Sobic004G106100 Sobic006G019700 Sobic006G019700 Sobic010G152400--Sobic006G019700 Sobic004G029100--Sobic004G322100 Sobic002G183700 Sobic002G183700 Sobic004G029100--Sobic002G183700 Sobic004G029100--Sobic010G152400 Sobic007G158800 Sobic007G158800 Sobic004G029100--Sobic007G158800 Sobic004G029100--Sobic003G000100 Sobic007G008600 Sobic007G008600 Sobic004G029100--Sobic007G008600 Sobic001G502000 Sobic001G502000 Sobic004G029100--Sobic001G502000 Sobic003G182200 Sobic003G182200 Sobic004G029100--Sobic003G182200 Sobic004G029100--Sobic008G019800 Sobic007G057400 Sobic007G057400 Sobic009G088500--Sobic007G057400 Sobic009G088500--Sobic002G385500 Sobic009G088500--Sobic004G322100 Sobic010G096400 Sobic010G096400 Sobic009G088500--Sobic010G096400 Sobic001G360500 Sobic001G360500 Sobic009G088500--Sobic001G360500 Sobic002G261500 Sobic002G261500 Sobic009G088500--Sobic002G261500 Sobic009G088500--Sobic008G019800 Sobic005G063400 Sobic005G063400 Sobic009G088500--Sobic005G063400 Sobic009G088500--Sobic010G152400 Sobic006G003100--Sobic003G000100 Sobic006G003100--Sobic010G152400 Sobic010G031700 Sobic010G031700 Sobic006G003100--Sobic010G031700 Sobic006G003100--Sobic004G106100 Sobic006G003100--Sobic007G086300 Sobic002G233200 Sobic002G233200 Sobic006G003100--Sobic002G233200 Sobic006G003100--Sobic004G322100 Sobic006G003100--Sobic004G306900 Sobic006G003100--Sobic007G158800 Sobic001G229000 Sobic001G229000 Sobic008G019800--Sobic001G229000 Sobic001G438200 Sobic001G438200 Sobic008G019800--Sobic001G438200 Sobic008G019800--Sobic010G152400 Sobic008G019800--Sobic004G029100 Sobic008G019800--Sobic001G502000 Sobic008G019800--Sobic004G322100 Sobic008G019800--Sobic007G158800 Sobic008G019800--Sobic002G183700 Sobic008G019800--Sobic004G306900 Sobic008G068300--Sobic004G029100 Sobic008G068300--Sobic002G385500 Sobic008G068300--Sobic001G502000 Sobic001G261509 Sobic001G261509 Sobic008G068300--Sobic001G261509 Sobic008G068300--Sobic006G089000 Sobic008G068300--Sobic007G158800 Sobic008G068300--Sobic002G183700 Sobic006G277500 Sobic006G277500 Sobic008G068300--Sobic006G277500 Sobic008G068300--Sobic010G152400 Sobic004G322100--Sobic003G000100 Sobic004G322100--Sobic010G152400 Sobic003G140700 Sobic003G140700 Sobic004G322100--Sobic003G140700 Sobic004G323300 Sobic004G323300 Sobic004G322100--Sobic004G323300 Sobic004G322100--Sobic004G306900 Sobic004G322100--Sobic006G019700 Sobic004G322100--Sobic004G029100 Sobic006G028500 Sobic006G028500 Sobic004G322100--Sobic006G028500 Sobic004G110700 Sobic004G110700 Sobic004G322100--Sobic004G110700 Sobic006G089000--Sobic007G158800 Sobic006G089000--Sobic001G502000 Sobic006G089000--Sobic002G183700 Sobic001G379400 Sobic001G379400 Sobic006G089000--Sobic001G379400 Sobic006G089000--Sobic001G261509 Sobic004G297900 Sobic004G297900 Sobic006G089000--Sobic004G297900 Sobic006G089000--Sobic001G229000 Sobic006G089000--Sobic004G322100 Sobic001G238300 Sobic001G238300 Sobic006G089000--Sobic001G238300
Octagon: transcription factors


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