Gene annotation
Transcriptome id Sobic.008G019800.1
Synonym Sb08g001750
Functional annotation -
UniProt C5YQR3
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a028993
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G229000 xyloglucan galactosyltransferase KATAMARI1, putative, expressed -
2 Sobic.001G438200 expressed protein -
3 Sobic.010G152400 glycosyltransferase, putative, expressed -
4 Sobic.004G029100 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
5 Sobic.001G502000 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
6 Sobic.004G322100 hypro1, putative, expressed -
7 Sobic.007G158800 patatin, putative, expressed -
8 Sobic.002G183700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@L-ascorbate oxidase precursor, putative, expressed -
9 Sobic.004G306900 amino acid transporter, putative, expressed -
10 Sobic.006G028500 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
11 Sobic.007G158600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@patatin, putative, expressed -
12 Sobic.010G148800 WRKY31, expressed -
13 Sobic.005G160700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
14 Sobic.003G140700 peroxidase precursor, putative, expressed -
15 Sobic.006G273300 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
16 Sobic.006G079300 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.009G219200 expressed protein -
18 Sobic.002G255000 AIR12, putative, expressed -
19 Sobic.002G385500 ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
20 Sobic.003G000100 STIGL1 - Stigma-specific Stig1 family protein precursor, expressed -


Gene co-expression network
sample Sobic008G019800 Sobic008G019800 Sobic001G229000 Sobic001G229000 Sobic008G019800--Sobic001G229000 Sobic001G438200 Sobic001G438200 Sobic008G019800--Sobic001G438200 Sobic010G152400 Sobic010G152400 Sobic008G019800--Sobic010G152400 Sobic004G029100 Sobic004G029100 Sobic008G019800--Sobic004G029100 Sobic001G502000 Sobic001G502000 Sobic008G019800--Sobic001G502000 Sobic004G322100 Sobic004G322100 Sobic008G019800--Sobic004G322100 Sobic007G158800 Sobic007G158800 Sobic008G019800--Sobic007G158800 Sobic002G183700 Sobic002G183700 Sobic008G019800--Sobic002G183700 Sobic004G306900 Sobic004G306900 Sobic008G019800--Sobic004G306900 Sobic001G229000--Sobic007G158800 Sobic006G028500 Sobic006G028500 Sobic001G229000--Sobic006G028500 Sobic001G229000--Sobic004G322100 Sobic001G229000--Sobic001G502000 Sobic007G086300 Sobic007G086300 Sobic001G229000--Sobic007G086300 Sobic004G110700 Sobic004G110700 Sobic001G229000--Sobic004G110700 Sobic001G229000--Sobic010G152400 Sobic001G229000--Sobic004G306900 Sobic001G229000--Sobic008G019800 Sobic003G064800 Sobic003G064800 Sobic001G438200--Sobic003G064800 Sobic002G255000 Sobic002G255000 Sobic001G438200--Sobic002G255000 Sobic003G140700 Sobic003G140700 Sobic001G438200--Sobic003G140700 Sobic003G319400 Sobic003G319400 Sobic001G438200--Sobic003G319400 Sobic009G219200 Sobic009G219200 Sobic001G438200--Sobic009G219200 Sobic006G106900 Sobic006G106900 Sobic001G438200--Sobic006G106900 Sobic001G438200--Sobic004G306900 Sobic006G273300 Sobic006G273300 Sobic001G438200--Sobic006G273300 Sobic001G438200--Sobic004G322100 Sobic003G000100 Sobic003G000100 Sobic010G152400--Sobic003G000100 Sobic010G152400--Sobic004G322100 Sobic003G240400 Sobic003G240400 Sobic010G152400--Sobic003G240400 Sobic010G152400--Sobic004G306900 Sobic006G092700 Sobic006G092700 Sobic010G152400--Sobic006G092700 Sobic010G082000 Sobic010G082000 Sobic010G152400--Sobic010G082000 Sobic006G003100 Sobic006G003100 Sobic010G152400--Sobic006G003100 Sobic004G106100 Sobic004G106100 Sobic010G152400--Sobic004G106100 Sobic006G019700 Sobic006G019700 Sobic010G152400--Sobic006G019700 Sobic004G029100--Sobic004G322100 Sobic004G029100--Sobic002G183700 Sobic004G029100--Sobic010G152400 Sobic004G029100--Sobic007G158800 Sobic004G029100--Sobic003G000100 Sobic007G008600 Sobic007G008600 Sobic004G029100--Sobic007G008600 Sobic004G029100--Sobic001G502000 Sobic003G182200 Sobic003G182200 Sobic004G029100--Sobic003G182200 Sobic004G029100--Sobic008G019800 Sobic001G502000--Sobic007G158800 Sobic005G222500 Sobic005G222500 Sobic001G502000--Sobic005G222500 Sobic006G089000 Sobic006G089000 Sobic001G502000--Sobic006G089000 Sobic001G502000--Sobic002G183700 Sobic001G502000--Sobic001G229000 Sobic001G261509 Sobic001G261509 Sobic001G502000--Sobic001G261509 Sobic001G502000--Sobic004G029100 Sobic003G400900 Sobic003G400900 Sobic001G502000--Sobic003G400900 Sobic001G502000--Sobic008G019800 Sobic004G322100--Sobic003G000100 Sobic004G322100--Sobic010G152400 Sobic004G322100--Sobic003G140700 Sobic004G323300 Sobic004G323300 Sobic004G322100--Sobic004G323300 Sobic004G322100--Sobic004G306900 Sobic004G322100--Sobic006G019700 Sobic004G322100--Sobic004G029100 Sobic004G322100--Sobic006G028500 Sobic004G322100--Sobic004G110700 Sobic007G158800--Sobic001G502000 Sobic007G158800--Sobic001G229000 Sobic007G158800--Sobic002G183700 Sobic007G158800--Sobic006G089000 Sobic007G158800--Sobic005G222500 Sobic007G158800--Sobic004G029100 Sobic007G158800--Sobic003G000100 Sobic007G158800--Sobic006G003100 Sobic007G158800--Sobic007G086300 Sobic002G183700--Sobic007G158800 Sobic002G183700--Sobic004G029100 Sobic002G183700--Sobic001G502000 Sobic002G183700--Sobic003G140700 Sobic002G183700--Sobic006G089000 Sobic006G274933 Sobic006G274933 Sobic002G183700--Sobic006G274933 Sobic006G225500 Sobic006G225500 Sobic002G183700--Sobic006G225500 Sobic002G183700--Sobic004G322100 Sobic003G311800 Sobic003G311800 Sobic002G183700--Sobic003G311800 Sobic004G306900--Sobic006G028500 Sobic004G306900--Sobic003G064800 Sobic004G306900--Sobic007G086300 Sobic004G306900--Sobic003G000100 Sobic004G306900--Sobic004G106100 Sobic004G306900--Sobic006G019700 Sobic004G306900--Sobic003G319400 Sobic004G306900--Sobic010G152400 Sobic004G306900--Sobic004G322100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.