Gene annotation
Transcriptome id Sobic.006G273300.1
Synonym SbCASP1, Sb06g033470, Casparian strip membrane protein 1
Functional annotation "cell wall modification, deposition of casparian strips, endodermis, transmembrane" (PubMedID : 24920445)
membrane associated DUF588 domain containing protein, putative, expressed
UniProt C5YAP3
Pfam PF04535
Panther DB PTHR11615 PTHR11615:SF132
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27370 : Uncharacterised protein family (UPF0497)
RAP-DB (Rice) LOC_Os04g58760.1 : membrane associated DUF588 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a033664 , Zm00025a009240
Brachypodium KQJ83603 , KQJ94755
Barley HORVU2Hr1G089180.2 , HORVU2Hr1G089180.1 , HORVU7Hr1G078490.1
Wheat TraesCS2A02G383000 , TraesCS2A02G383000 , TraesCS2B02G400200 , TraesCS2D02G379300 , TraesCS2D02G379300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G255000 AIR12, putative, expressed -
2 Sobic.001G438200 expressed protein -
3 Sobic.007G008600 GLTP domain containing protein, putative, expressed -
4 Sobic.003G140700 peroxidase precursor, putative, expressed -
5 Sobic.003G064800 dirigent, putative, expressed -
6 Sobic.006G225500 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.005G127400 expressed protein -
8 Sobic.004G029100 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
9 Sobic.002G183700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@L-ascorbate oxidase precursor, putative, expressed -
10 Sobic.004G322100 hypro1, putative, expressed -
11 Sobic.001G238200 expansin precursor, putative, expressed -
12 Sobic.006G106900 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
13 Sobic.009G219200 expressed protein -
14 Sobic.009G186500 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.008G019800 - -
16 Sobic.001G062500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aldehyde oxidase, putative, expressed K11817: indole-3-acetaldehyde oxidase
17 Sobic.004G323300 SCP-like extracellular protein, expressed -
18 Sobic.004G306900 amino acid transporter, putative, expressed -
19 Sobic.003G349400 expressed protein -
20 Sobic.007G158800 patatin, putative, expressed -


Gene co-expression network
sample Sobic006G273300 Sobic006G273300 Sobic002G255000 Sobic002G255000 Sobic006G273300--Sobic002G255000 Sobic001G438200 Sobic001G438200 Sobic006G273300--Sobic001G438200 Sobic007G008600 Sobic007G008600 Sobic006G273300--Sobic007G008600 Sobic003G140700 Sobic003G140700 Sobic006G273300--Sobic003G140700 Sobic003G064800 Sobic003G064800 Sobic006G273300--Sobic003G064800 Sobic006G225500 Sobic006G225500 Sobic006G273300--Sobic006G225500 Sobic005G127400 Sobic005G127400 Sobic006G273300--Sobic005G127400 Sobic004G029100 Sobic004G029100 Sobic006G273300--Sobic004G029100 Sobic002G183700 Sobic002G183700 Sobic006G273300--Sobic002G183700 Sobic002G255000--Sobic003G064800 Sobic002G255000--Sobic007G008600 Sobic002G255000--Sobic001G438200 Sobic002G255000--Sobic003G140700 Sobic002G255000--Sobic005G127400 Sobic009G186500 Sobic009G186500 Sobic002G255000--Sobic009G186500 Sobic002G255000--Sobic006G225500 Sobic001G238200 Sobic001G238200 Sobic002G255000--Sobic001G238200 Sobic007G100700 Sobic007G100700 Sobic002G255000--Sobic007G100700 Sobic001G438200--Sobic003G064800 Sobic001G438200--Sobic002G255000 Sobic001G438200--Sobic003G140700 Sobic003G319400 Sobic003G319400 Sobic001G438200--Sobic003G319400 Sobic009G219200 Sobic009G219200 Sobic001G438200--Sobic009G219200 Sobic006G106900 Sobic006G106900 Sobic001G438200--Sobic006G106900 Sobic004G306900 Sobic004G306900 Sobic001G438200--Sobic004G306900 Sobic001G438200--Sobic006G273300 Sobic004G322100 Sobic004G322100 Sobic001G438200--Sobic004G322100 Sobic007G008600--Sobic002G255000 Sobic007G008600--Sobic007G100700 Sobic007G008600--Sobic003G064800 Sobic007G008600--Sobic006G273300 Sobic007G008600--Sobic006G106900 Sobic007G008600--Sobic005G127400 Sobic007G008600--Sobic004G029100 Sobic003G182200 Sobic003G182200 Sobic007G008600--Sobic003G182200 Sobic007G008600--Sobic006G225500 Sobic003G140700--Sobic009G219200 Sobic003G140700--Sobic003G064800 Sobic003G140700--Sobic006G225500 Sobic003G140700--Sobic004G322100 Sobic003G140700--Sobic001G438200 Sobic003G140700--Sobic002G255000 Sobic003G140700--Sobic001G238200 Sobic003G140700--Sobic005G127400 Sobic004G110700 Sobic004G110700 Sobic003G140700--Sobic004G110700 Sobic003G064800--Sobic005G127400 Sobic003G064800--Sobic002G255000 Sobic003G064800--Sobic004G306900 Sobic003G064800--Sobic001G438200 Sobic003G064800--Sobic006G106900 Sobic003G064800--Sobic001G238200 Sobic003G064800--Sobic003G140700 Sobic007G086300 Sobic007G086300 Sobic003G064800--Sobic007G086300 Sobic010G234500 Sobic010G234500 Sobic003G064800--Sobic010G234500 Sobic006G225500--Sobic009G186500 Sobic006G225500--Sobic003G140700 Sobic006G225500--Sobic005G127400 Sobic006G225500--Sobic002G255000 Sobic003G399600 Sobic003G399600 Sobic006G225500--Sobic003G399600 Sobic006G225500--Sobic006G273300 Sobic006G225500--Sobic002G183700 Sobic006G225500--Sobic003G064800 Sobic006G225500--Sobic007G008600 Sobic005G127400--Sobic003G064800 Sobic003G349400 Sobic003G349400 Sobic005G127400--Sobic003G349400 Sobic005G127400--Sobic006G225500 Sobic005G127400--Sobic002G255000 Sobic006G150100 Sobic006G150100 Sobic005G127400--Sobic006G150100 Sobic005G127400--Sobic003G140700 Sobic005G127400--Sobic009G186500 Sobic005G127400--Sobic010G234500 Sobic005G127400--Sobic004G110700 Sobic004G029100--Sobic004G322100 Sobic004G029100--Sobic002G183700 Sobic010G152400 Sobic010G152400 Sobic004G029100--Sobic010G152400 Sobic007G158800 Sobic007G158800 Sobic004G029100--Sobic007G158800 Sobic003G000100 Sobic003G000100 Sobic004G029100--Sobic003G000100 Sobic004G029100--Sobic007G008600 Sobic001G502000 Sobic001G502000 Sobic004G029100--Sobic001G502000 Sobic004G029100--Sobic003G182200 Sobic008G019800 Sobic008G019800 Sobic004G029100--Sobic008G019800 Sobic002G183700--Sobic007G158800 Sobic002G183700--Sobic004G029100 Sobic002G183700--Sobic001G502000 Sobic002G183700--Sobic003G140700 Sobic006G089000 Sobic006G089000 Sobic002G183700--Sobic006G089000 Sobic006G274933 Sobic006G274933 Sobic002G183700--Sobic006G274933 Sobic002G183700--Sobic006G225500 Sobic002G183700--Sobic004G322100 Sobic003G311800 Sobic003G311800 Sobic002G183700--Sobic003G311800
Octagon: transcription factors


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