Gene annotation
Transcriptome id Sobic.002G183700.1
Synonym Sb02g023150
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
L-ascorbate oxidase precursor, putative, expressed
UniProt C5XBA0
Pfam PF00394 PF07731 PF07732
Panther DB PTHR11709:SF28 PTHR11709
NCBI CDD KOG1263; Multicopper oxidases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0005507copper ion binding


Orthologs (automatic annotation)
TAIR AT4G39830 : Cupredoxin superfamily protein
RAP-DB (Rice) LOC_Os09g20090.1 : L-ascorbate oxidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a039744 , Zm00025a046704 , Zm00025a046705
Brachypodium KQJ90932 , KQJ90009
Barley HORVU7Hr1G087250.5 , HORVU7Hr1G087250.4 , HORVU7Hr1G087250.2 , HORVU5Hr1G057800.4 , HORVU5Hr1G057800.6 , HORVU5Hr1G057800.5 , HORVU5Hr1G057800.3 , HORVU5Hr1G057800.2 , HORVU7Hr1G087250.8 , HORVU7Hr1G087250.1
Wheat TraesCS5A02G191200 , TraesCS3A02G452400 , TraesCS5B02G192000 , TraesCS7A02G361800 , TraesCS7B02G265300 , TraesCS5A02G286900 , TraesCS5B02G192000 , TraesCS5A02G287000 , TraesCS5D02G199900 , TraesCS5D02G294600 , TraesCS7D02G361200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G158800 patatin, putative, expressed -
2 Sobic.004G029100 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
3 Sobic.001G502000 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
4 Sobic.003G140700 peroxidase precursor, putative, expressed -
5 Sobic.006G089000 helix-loop-helix DNA-binding protein, putative, expressed -
6 Sobic.006G274933 - -
7 Sobic.006G225500 plastocyanin-like domain containing protein, putative, expressed -
8 Sobic.004G322100 hypro1, putative, expressed -
9 Sobic.003G311800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed -
10 Sobic.004G297900 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.008G019800 - -
12 Sobic.001G430100 - -
13 Sobic.003G121100 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.006G273300 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
15 Sobic.004G209400 carbonyl reductase 3, putative, expressed -
16 Sobic.003G269600 "CYP711A family, the cytochrome P450 homepage. Catalyzed the conversion of carlactone (CL) to carlactonoic acid (CLA)."(PubMedID : 33793911)@Synthesized carlactonoic acid (CLA) from carlactone (CL).(PubMedID : 34970291)@cytochrome P450, putative, expressed -
17 Sobic.001G229000 xyloglucan galactosyltransferase KATAMARI1, putative, expressed -
18 Sobic.004G110700 DNA binding protein, putative, expressed -
19 Sobic.001G438200 expressed protein -
20 Sobic.002G301900 oxidoreductase, aldo/keto reductase family protein, putative, expressed -


Gene co-expression network
sample Sobic002G183700 Sobic002G183700 Sobic007G158800 Sobic007G158800 Sobic002G183700--Sobic007G158800 Sobic004G029100 Sobic004G029100 Sobic002G183700--Sobic004G029100 Sobic001G502000 Sobic001G502000 Sobic002G183700--Sobic001G502000 Sobic003G140700 Sobic003G140700 Sobic002G183700--Sobic003G140700 Sobic006G089000 Sobic006G089000 Sobic002G183700--Sobic006G089000 Sobic006G274933 Sobic006G274933 Sobic002G183700--Sobic006G274933 Sobic006G225500 Sobic006G225500 Sobic002G183700--Sobic006G225500 Sobic004G322100 Sobic004G322100 Sobic002G183700--Sobic004G322100 Sobic003G311800 Sobic003G311800 Sobic002G183700--Sobic003G311800 Sobic007G158800--Sobic001G502000 Sobic001G229000 Sobic001G229000 Sobic007G158800--Sobic001G229000 Sobic007G158800--Sobic002G183700 Sobic007G158800--Sobic006G089000 Sobic005G222500 Sobic005G222500 Sobic007G158800--Sobic005G222500 Sobic007G158800--Sobic004G029100 Sobic003G000100 Sobic003G000100 Sobic007G158800--Sobic003G000100 Sobic006G003100 Sobic006G003100 Sobic007G158800--Sobic006G003100 Sobic007G086300 Sobic007G086300 Sobic007G158800--Sobic007G086300 Sobic004G029100--Sobic004G322100 Sobic004G029100--Sobic002G183700 Sobic010G152400 Sobic010G152400 Sobic004G029100--Sobic010G152400 Sobic004G029100--Sobic007G158800 Sobic004G029100--Sobic003G000100 Sobic007G008600 Sobic007G008600 Sobic004G029100--Sobic007G008600 Sobic004G029100--Sobic001G502000 Sobic003G182200 Sobic003G182200 Sobic004G029100--Sobic003G182200 Sobic008G019800 Sobic008G019800 Sobic004G029100--Sobic008G019800 Sobic001G502000--Sobic007G158800 Sobic001G502000--Sobic005G222500 Sobic001G502000--Sobic006G089000 Sobic001G502000--Sobic002G183700 Sobic001G502000--Sobic001G229000 Sobic001G261509 Sobic001G261509 Sobic001G502000--Sobic001G261509 Sobic001G502000--Sobic004G029100 Sobic003G400900 Sobic003G400900 Sobic001G502000--Sobic003G400900 Sobic001G502000--Sobic008G019800 Sobic009G219200 Sobic009G219200 Sobic003G140700--Sobic009G219200 Sobic003G064800 Sobic003G064800 Sobic003G140700--Sobic003G064800 Sobic003G140700--Sobic006G225500 Sobic003G140700--Sobic004G322100 Sobic001G438200 Sobic001G438200 Sobic003G140700--Sobic001G438200 Sobic002G255000 Sobic002G255000 Sobic003G140700--Sobic002G255000 Sobic001G238200 Sobic001G238200 Sobic003G140700--Sobic001G238200 Sobic005G127400 Sobic005G127400 Sobic003G140700--Sobic005G127400 Sobic004G110700 Sobic004G110700 Sobic003G140700--Sobic004G110700 Sobic006G089000--Sobic007G158800 Sobic006G089000--Sobic001G502000 Sobic006G089000--Sobic002G183700 Sobic001G379400 Sobic001G379400 Sobic006G089000--Sobic001G379400 Sobic006G089000--Sobic001G261509 Sobic004G297900 Sobic004G297900 Sobic006G089000--Sobic004G297900 Sobic006G089000--Sobic001G229000 Sobic006G089000--Sobic004G322100 Sobic001G238300 Sobic001G238300 Sobic006G089000--Sobic001G238300 Sobic006G274933--Sobic002G183700 Sobic006G274933--Sobic003G311800 Sobic003G269600 Sobic003G269600 Sobic006G274933--Sobic003G269600 Sobic006G274933--Sobic003G140700 Sobic002G361200 Sobic002G361200 Sobic006G274933--Sobic002G361200 Sobic001G062500 Sobic001G062500 Sobic006G274933--Sobic001G062500 Sobic003G399600 Sobic003G399600 Sobic006G274933--Sobic003G399600 Sobic006G274933--Sobic006G225500 Sobic003G121100 Sobic003G121100 Sobic006G274933--Sobic003G121100 Sobic009G186500 Sobic009G186500 Sobic006G225500--Sobic009G186500 Sobic006G225500--Sobic003G140700 Sobic006G225500--Sobic005G127400 Sobic006G225500--Sobic002G255000 Sobic006G225500--Sobic003G399600 Sobic006G273300 Sobic006G273300 Sobic006G225500--Sobic006G273300 Sobic006G225500--Sobic002G183700 Sobic006G225500--Sobic003G064800 Sobic006G225500--Sobic007G008600 Sobic004G322100--Sobic003G000100 Sobic004G322100--Sobic010G152400 Sobic004G322100--Sobic003G140700 Sobic004G323300 Sobic004G323300 Sobic004G322100--Sobic004G323300 Sobic004G306900 Sobic004G306900 Sobic004G322100--Sobic004G306900 Sobic006G019700 Sobic006G019700 Sobic004G322100--Sobic006G019700 Sobic004G322100--Sobic004G029100 Sobic006G028500 Sobic006G028500 Sobic004G322100--Sobic006G028500 Sobic004G322100--Sobic004G110700 Sobic003G311800--Sobic004G297900 Sobic002G003800 Sobic002G003800 Sobic003G311800--Sobic002G003800 Sobic001G049900 Sobic001G049900 Sobic003G311800--Sobic001G049900 Sobic009G109000 Sobic009G109000 Sobic003G311800--Sobic009G109000 Sobic006G197100 Sobic006G197100 Sobic003G311800--Sobic006G197100 Sobic003G311800--Sobic006G274933 Sobic003G311800--Sobic002G183700 Sobic007G090469 Sobic007G090469 Sobic003G311800--Sobic007G090469 Sobic004G042000 Sobic004G042000 Sobic003G311800--Sobic004G042000
Octagon: transcription factors


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