Gene annotation
Transcriptome id Sobic.006G274933.1
Synonym -
Functional annotation -
UniProt C5YB01
Pfam PF04564
Panther DB PTHR22849 PTHR22849:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT2G35930 : plant U-box 23
RAP-DB (Rice) LOC_Os04g58920.1 : U-box domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a009231
Brachypodium -
Barley HORVU2Hr1G123050.1 , HORVU2Hr1G123130.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G183700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@L-ascorbate oxidase precursor, putative, expressed -
2 Sobic.003G311800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed -
3 Sobic.003G269600 "CYP711A family, the cytochrome P450 homepage. Catalyzed the conversion of carlactone (CL) to carlactonoic acid (CLA)."(PubMedID : 33793911)@Synthesized carlactonoic acid (CLA) from carlactone (CL).(PubMedID : 34970291)@cytochrome P450, putative, expressed -
4 Sobic.003G140700 peroxidase precursor, putative, expressed -
5 Sobic.002G361200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@sex determination protein tasselseed-2, putative, expressed -
6 Sobic.001G062500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aldehyde oxidase, putative, expressed K11817: indole-3-acetaldehyde oxidase
7 Sobic.003G399600 LTPL38 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
8 Sobic.006G225500 plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.003G121100 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.004G029100 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
11 Sobic.007G090469 - -
12 Sobic.004G110700 DNA binding protein, putative, expressed -
13 Sobic.001G430100 - -
14 Sobic.006G197100 DNA binding protein, putative, expressed -
15 Sobic.006G256900 dirigent-like protein pDIR17, putative, expressed -
16 Sobic.003G417100 esterase, putative, expressed -
17 Sobic.003G119500 expressed protein -
18 Sobic.010G071400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.004G297900 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.003G228600 cytochrome P450 72A1, putative, expressed -


Gene co-expression network
sample Sobic006G274933 Sobic006G274933 Sobic002G183700 Sobic002G183700 Sobic006G274933--Sobic002G183700 Sobic003G311800 Sobic003G311800 Sobic006G274933--Sobic003G311800 Sobic003G269600 Sobic003G269600 Sobic006G274933--Sobic003G269600 Sobic003G140700 Sobic003G140700 Sobic006G274933--Sobic003G140700 Sobic002G361200 Sobic002G361200 Sobic006G274933--Sobic002G361200 Sobic001G062500 Sobic001G062500 Sobic006G274933--Sobic001G062500 Sobic003G399600 Sobic003G399600 Sobic006G274933--Sobic003G399600 Sobic006G225500 Sobic006G225500 Sobic006G274933--Sobic006G225500 Sobic003G121100 Sobic003G121100 Sobic006G274933--Sobic003G121100 Sobic007G158800 Sobic007G158800 Sobic002G183700--Sobic007G158800 Sobic004G029100 Sobic004G029100 Sobic002G183700--Sobic004G029100 Sobic001G502000 Sobic001G502000 Sobic002G183700--Sobic001G502000 Sobic002G183700--Sobic003G140700 Sobic006G089000 Sobic006G089000 Sobic002G183700--Sobic006G089000 Sobic002G183700--Sobic006G274933 Sobic002G183700--Sobic006G225500 Sobic004G322100 Sobic004G322100 Sobic002G183700--Sobic004G322100 Sobic002G183700--Sobic003G311800 Sobic004G297900 Sobic004G297900 Sobic003G311800--Sobic004G297900 Sobic002G003800 Sobic002G003800 Sobic003G311800--Sobic002G003800 Sobic001G049900 Sobic001G049900 Sobic003G311800--Sobic001G049900 Sobic009G109000 Sobic009G109000 Sobic003G311800--Sobic009G109000 Sobic006G197100 Sobic006G197100 Sobic003G311800--Sobic006G197100 Sobic003G311800--Sobic006G274933 Sobic003G311800--Sobic002G183700 Sobic007G090469 Sobic007G090469 Sobic003G311800--Sobic007G090469 Sobic004G042000 Sobic004G042000 Sobic003G311800--Sobic004G042000 Sobic004G110700 Sobic004G110700 Sobic003G269600--Sobic004G110700 Sobic003G269600--Sobic003G399600 Sobic003G269600--Sobic006G274933 Sobic006G150100 Sobic006G150100 Sobic003G269600--Sobic006G150100 Sobic003G269600--Sobic002G183700 Sobic010G106500 Sobic010G106500 Sobic003G269600--Sobic010G106500 Sobic003G269600--Sobic003G121100 Sobic003G269600--Sobic003G140700 Sobic006G170600 Sobic006G170600 Sobic003G269600--Sobic006G170600 Sobic009G219200 Sobic009G219200 Sobic003G140700--Sobic009G219200 Sobic003G064800 Sobic003G064800 Sobic003G140700--Sobic003G064800 Sobic003G140700--Sobic006G225500 Sobic003G140700--Sobic004G322100 Sobic001G438200 Sobic001G438200 Sobic003G140700--Sobic001G438200 Sobic002G255000 Sobic002G255000 Sobic003G140700--Sobic002G255000 Sobic001G238200 Sobic001G238200 Sobic003G140700--Sobic001G238200 Sobic005G127400 Sobic005G127400 Sobic003G140700--Sobic005G127400 Sobic003G140700--Sobic004G110700 Sobic002G361200--Sobic006G274933 Sobic002G361200--Sobic003G311800 Sobic010G001000 Sobic010G001000 Sobic002G361200--Sobic010G001000 Sobic002G361200--Sobic007G090469 Sobic006G157900 Sobic006G157900 Sobic002G361200--Sobic006G157900 Sobic002G361200--Sobic002G183700 Sobic001G300500 Sobic001G300500 Sobic002G361200--Sobic001G300500 Sobic003G417100 Sobic003G417100 Sobic002G361200--Sobic003G417100 Sobic010G252500 Sobic010G252500 Sobic002G361200--Sobic010G252500 Sobic006G273300 Sobic006G273300 Sobic001G062500--Sobic006G273300 Sobic001G062500--Sobic003G140700 Sobic004G209400 Sobic004G209400 Sobic001G062500--Sobic004G209400 Sobic001G062500--Sobic006G274933 Sobic001G062500--Sobic006G225500 Sobic001G062500--Sobic002G183700 Sobic001G062500--Sobic001G438200 Sobic001G062500--Sobic002G255000 Sobic001G062500--Sobic007G090469 Sobic003G399600--Sobic006G225500 Sobic003G399600--Sobic003G269600 Sobic002G326500 Sobic002G326500 Sobic003G399600--Sobic002G326500 Sobic003G399600--Sobic003G140700 Sobic006G172500 Sobic006G172500 Sobic003G399600--Sobic006G172500 Sobic001G304201 Sobic001G304201 Sobic003G399600--Sobic001G304201 Sobic003G399600--Sobic004G110700 Sobic009G186500 Sobic009G186500 Sobic003G399600--Sobic009G186500 Sobic003G399600--Sobic006G150100 Sobic006G225500--Sobic009G186500 Sobic006G225500--Sobic003G140700 Sobic006G225500--Sobic005G127400 Sobic006G225500--Sobic002G255000 Sobic006G225500--Sobic003G399600 Sobic006G225500--Sobic006G273300 Sobic006G225500--Sobic002G183700 Sobic006G225500--Sobic003G064800 Sobic007G008600 Sobic007G008600 Sobic006G225500--Sobic007G008600 Sobic003G121100--Sobic002G183700 Sobic003G121100--Sobic004G110700 Sobic003G121100--Sobic006G225500 Sobic003G121100--Sobic003G140700 Sobic003G121100--Sobic003G269600 Sobic003G121100--Sobic003G311800 Sobic003G121100--Sobic006G170600 Sobic003G121100--Sobic003G399600 Sobic003G121100--Sobic006G274933
Octagon: transcription factors


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