Gene annotation
Transcriptome id Sobic.004G110700.1
Synonym Sb04g009050
Functional annotation DNA binding protein, putative, expressed
UniProt C5XZ37
Pfam PF03479
Panther DB PTHR31100 PTHR31100:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G22810 : Predicted AT-hook DNA-binding family protein
RAP-DB (Rice) LOC_Os02g25020.1 : DNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a047312 , Zm00025a014098 , Zm00025a034453 , Zm00025a050111 , Zm00025a001794 , Zm00025a019952
Brachypodium KQJ94635 , KQK22376 , KQK17622
Barley HORVU6Hr1G037640.1 , HORVU7Hr1G020390.1 , HORVU6Hr1G067700.1 , HORVU0Hr1G011700.1 , HORVU6Hr1G037630.2 , HORVU6Hr1G037630.1 , HORVU6Hr1G010470.1 , HORVU6Hr1G010470.2
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G028500 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
2 Sobic.003G269600 "CYP711A family, the cytochrome P450 homepage. Catalyzed the conversion of carlactone (CL) to carlactonoic acid (CLA)."(PubMedID : 33793911)@Synthesized carlactonoic acid (CLA) from carlactone (CL).(PubMedID : 34970291)@cytochrome P450, putative, expressed -
3 Sobic.006G150100 Down-regulated by silicon application(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
4 Sobic.003G140700 peroxidase precursor, putative, expressed -
5 Sobic.002G003700 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.004G322100 hypro1, putative, expressed -
7 Sobic.005G127400 expressed protein -
8 Sobic.001G229000 xyloglucan galactosyltransferase KATAMARI1, putative, expressed -
9 Sobic.006G019700 transferase family protein, putative, expressed -
10 Sobic.003G349400 expressed protein -
11 Sobic.010G234500 O-methyltransferase, putative, expressed -
12 Sobic.003G064800 dirigent, putative, expressed -
13 Sobic.004G271800 WRKY66, expressed -
14 Sobic.004G323300 SCP-like extracellular protein, expressed -
15 Sobic.004G306900 amino acid transporter, putative, expressed -
16 Sobic.003G182200 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed -
17 Sobic.006G225500 plastocyanin-like domain containing protein, putative, expressed -
18 Sobic.003G121100 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.002G183700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@L-ascorbate oxidase precursor, putative, expressed -
20 Sobic.001G238000 expansin precursor, putative, expressed -


Gene co-expression network
sample Sobic004G110700 Sobic004G110700 Sobic006G028500 Sobic006G028500 Sobic004G110700--Sobic006G028500 Sobic003G269600 Sobic003G269600 Sobic004G110700--Sobic003G269600 Sobic006G150100 Sobic006G150100 Sobic004G110700--Sobic006G150100 Sobic003G140700 Sobic003G140700 Sobic004G110700--Sobic003G140700 Sobic002G003700 Sobic002G003700 Sobic004G110700--Sobic002G003700 Sobic004G322100 Sobic004G322100 Sobic004G110700--Sobic004G322100 Sobic005G127400 Sobic005G127400 Sobic004G110700--Sobic005G127400 Sobic001G229000 Sobic001G229000 Sobic004G110700--Sobic001G229000 Sobic006G019700 Sobic006G019700 Sobic004G110700--Sobic006G019700 Sobic004G306900 Sobic004G306900 Sobic006G028500--Sobic004G306900 Sobic006G028500--Sobic006G019700 Sobic006G028500--Sobic004G110700 Sobic006G028500--Sobic001G229000 Sobic003G240400 Sobic003G240400 Sobic006G028500--Sobic003G240400 Sobic010G082000 Sobic010G082000 Sobic006G028500--Sobic010G082000 Sobic006G028500--Sobic004G322100 Sobic010G152400 Sobic010G152400 Sobic006G028500--Sobic010G152400 Sobic003G000100 Sobic003G000100 Sobic006G028500--Sobic003G000100 Sobic003G269600--Sobic004G110700 Sobic003G399600 Sobic003G399600 Sobic003G269600--Sobic003G399600 Sobic006G274933 Sobic006G274933 Sobic003G269600--Sobic006G274933 Sobic003G269600--Sobic006G150100 Sobic002G183700 Sobic002G183700 Sobic003G269600--Sobic002G183700 Sobic010G106500 Sobic010G106500 Sobic003G269600--Sobic010G106500 Sobic003G121100 Sobic003G121100 Sobic003G269600--Sobic003G121100 Sobic003G269600--Sobic003G140700 Sobic006G170600 Sobic006G170600 Sobic003G269600--Sobic006G170600 Sobic003G349400 Sobic003G349400 Sobic006G150100--Sobic003G349400 Sobic006G150100--Sobic005G127400 Sobic006G150100--Sobic002G003700 Sobic006G150100--Sobic004G110700 Sobic006G150100--Sobic006G170600 Sobic002G068000 Sobic002G068000 Sobic006G150100--Sobic002G068000 Sobic010G234500 Sobic010G234500 Sobic006G150100--Sobic010G234500 Sobic010G158400 Sobic010G158400 Sobic006G150100--Sobic010G158400 Sobic006G225500 Sobic006G225500 Sobic006G150100--Sobic006G225500 Sobic009G219200 Sobic009G219200 Sobic003G140700--Sobic009G219200 Sobic003G064800 Sobic003G064800 Sobic003G140700--Sobic003G064800 Sobic003G140700--Sobic006G225500 Sobic003G140700--Sobic004G322100 Sobic001G438200 Sobic001G438200 Sobic003G140700--Sobic001G438200 Sobic002G255000 Sobic002G255000 Sobic003G140700--Sobic002G255000 Sobic001G238200 Sobic001G238200 Sobic003G140700--Sobic001G238200 Sobic003G140700--Sobic005G127400 Sobic003G140700--Sobic004G110700 Sobic002G003700--Sobic006G150100 Sobic002G003700--Sobic004G110700 Sobic002G003700--Sobic005G127400 Sobic002G003700--Sobic006G170600 Sobic002G003700--Sobic003G349400 Sobic002G122400 Sobic002G122400 Sobic002G003700--Sobic002G122400 Sobic002G003700--Sobic001G229000 Sobic003G132400 Sobic003G132400 Sobic002G003700--Sobic003G132400 Sobic002G003700--Sobic006G028500 Sobic004G322100--Sobic003G000100 Sobic004G322100--Sobic010G152400 Sobic004G322100--Sobic003G140700 Sobic004G323300 Sobic004G323300 Sobic004G322100--Sobic004G323300 Sobic004G322100--Sobic004G306900 Sobic004G322100--Sobic006G019700 Sobic004G029100 Sobic004G029100 Sobic004G322100--Sobic004G029100 Sobic004G322100--Sobic006G028500 Sobic004G322100--Sobic004G110700 Sobic005G127400--Sobic003G064800 Sobic005G127400--Sobic003G349400 Sobic005G127400--Sobic006G225500 Sobic005G127400--Sobic002G255000 Sobic005G127400--Sobic006G150100 Sobic005G127400--Sobic003G140700 Sobic009G186500 Sobic009G186500 Sobic005G127400--Sobic009G186500 Sobic005G127400--Sobic010G234500 Sobic005G127400--Sobic004G110700 Sobic007G158800 Sobic007G158800 Sobic001G229000--Sobic007G158800 Sobic001G229000--Sobic006G028500 Sobic001G229000--Sobic004G322100 Sobic001G502000 Sobic001G502000 Sobic001G229000--Sobic001G502000 Sobic007G086300 Sobic007G086300 Sobic001G229000--Sobic007G086300 Sobic001G229000--Sobic004G110700 Sobic001G229000--Sobic010G152400 Sobic001G229000--Sobic004G306900 Sobic008G019800 Sobic008G019800 Sobic001G229000--Sobic008G019800 Sobic006G019700--Sobic004G306900 Sobic003G182200 Sobic003G182200 Sobic006G019700--Sobic003G182200 Sobic006G019700--Sobic006G028500 Sobic006G019700--Sobic004G322100 Sobic006G019700--Sobic010G082000 Sobic006G092700 Sobic006G092700 Sobic006G019700--Sobic006G092700 Sobic006G019700--Sobic010G152400 Sobic006G135300 Sobic006G135300 Sobic006G019700--Sobic006G135300 Sobic006G019700--Sobic003G000100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.