Gene annotation
| Transcriptome id | Sobic.002G003700.1 |
|---|---|
| Synonym | RCI3A, RCI3, Sb02g000520 |
| Functional annotation | peroxidase precursor, putative, expressed |
| UniProt | C5X749 |
| Pfam | PF00141 |
| Panther DB | PTHR31235 PTHR31235:SF41 |
| NCBI CDD | - |
| KEGG Orthology | K00430; peroxidase |
| Gene Ontology | GO:0006979; response to oxidative stress GO:0004601peroxidase activity |
Orthologs (automatic annotation)
| TAIR | AT1G05260 : Peroxidase superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g01420.1 : peroxidase precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a034847 , Zm00025a024093 , Zm00025a040226 , Zm00025a044846 |
| Brachypodium | KQK14660 , KQK21231 |
| Barley | HORVU2Hr1G018570.1 , HORVU4Hr1G090050.1 , HORVU4Hr1G090050.2 , HORVU4Hr1G090050.3 |
| Wheat | TraesCS2B02G125200 , TraesCS2B02G125200 , TraesCS2D02G107800 , TraesCS2A02G107700 , TraesCS2B02G317200 , TraesCS2B02G124600 , TraesCS2B02G124800 , TraesCS1A02G200100 , TraesCS2B02G125800 , TraesCS2A02G107500 , TraesCS2A02G107500 , TraesCS2D02G299700 , TraesCS2D02G107600 , TraesCS1B02G214800 , TraesCS2D02G108500 , TraesCS2B02G126200 , TraesCS4B02G385000 , TraesCS2D02G107400 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G150100 | Down-regulated by silicon application(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed | K09872: aquaporin PIP |
| 2 | Sobic.004G110700 | DNA binding protein, putative, expressed | - |
| 3 | Sobic.005G127400 | expressed protein | - |
| 4 | Sobic.006G170600 | tonoplast intrinsic protein("PubMedID : 26759170,PubMedID : 24597475")@aquaporin protein, putative, expressed | K09873: aquaporin TIP |
| 5 | Sobic.003G349400 | expressed protein | - |
| 6 | Sobic.002G122400 | GLTP domain containing protein, putative, expressed | - |
| 7 | Sobic.001G229000 | xyloglucan galactosyltransferase KATAMARI1, putative, expressed | - |
| 8 | Sobic.003G132400 | OsSubt1 - Putative Subtilisin homologue, expressed | - |
| 9 | Sobic.006G028500 | 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed | - |
| 10 | Sobic.010G234500 | O-methyltransferase, putative, expressed | - |
| 11 | Sobic.009G186500 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 12 | Sobic.003G269600 | "CYP711A family, the cytochrome P450 homepage. Catalyzed the conversion of carlactone (CL) to carlactonoic acid (CLA)."(PubMedID : 33793911)@Synthesized carlactonoic acid (CLA) from carlactone (CL).(PubMedID : 34970291)@cytochrome P450, putative, expressed | - |
| 13 | Sobic.005G097600 | gibberellin 20 oxidase 2, putative, expressed | - |
| 14 | Sobic.001G237800 | expansin precursor, putative, expressed | - |
| 15 | Sobic.010G158400 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 16 | Sobic.006G100501 | - | - |
| 17 | Sobic.006G225500 | plastocyanin-like domain containing protein, putative, expressed | - |
| 18 | Sobic.004G351200 | -(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed | K09872: aquaporin PIP |
| 19 | Sobic.002G392100 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 20 | Sobic.002G329200 | plastocyanin-like domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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