Gene annotation
Transcriptome id Sobic.010G158400.1
Synonym Sb10g021077
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A194YJG8
Pfam PF13639
Panther DB PTHR14155
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G40070 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g34530.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G068000 expressed protein -
2 Sobic.009G032900 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.003G426500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.003G349400 expressed protein -
5 Sobic.004G351200 -(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
6 Sobic.003G185300 dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
7 Sobic.005G216700 plant protein of unknown function domain containing protein, expressed -
8 Sobic.009G259800 zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
9 Sobic.006G150100 Down-regulated by silicon application(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
10 Sobic.003G182200 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed -
11 Sobic.003G269900 OsSub12 - Putative Subtilisin homologue, expressed -
12 Sobic.003G240400 leaf senescence related protein, putative, expressed -
13 Sobic.010G234500 O-methyltransferase, putative, expressed -
14 Sobic.010G139100 serine/threonine-protein kinase, putative, expressed -
15 Sobic.001G263300 glycosyltransferase, putative, expressed K18207: POMGNT2, protein O-mannose beta-1,4-N-acetylglucosaminyltransferase
16 Sobic.010G066800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
17 Sobic.002G115600 membrane protein, putative, expressed -
18 Sobic.006G019700 transferase family protein, putative, expressed -
19 Sobic.004G110700 DNA binding protein, putative, expressed -
20 Sobic.006G196400 U-box, putative, expressed -


Gene co-expression network
sample Sobic010G158400 Sobic010G158400 Sobic002G068000 Sobic002G068000 Sobic010G158400--Sobic002G068000 Sobic009G032900 Sobic009G032900 Sobic010G158400--Sobic009G032900 Sobic003G426500 Sobic003G426500 Sobic010G158400--Sobic003G426500 Sobic003G349400 Sobic003G349400 Sobic010G158400--Sobic003G349400 Sobic004G351200 Sobic004G351200 Sobic010G158400--Sobic004G351200 Sobic003G185300 Sobic003G185300 Sobic010G158400--Sobic003G185300 Sobic005G216700 Sobic005G216700 Sobic010G158400--Sobic005G216700 Sobic009G259800 Sobic009G259800 Sobic010G158400--Sobic009G259800 Sobic006G150100 Sobic006G150100 Sobic010G158400--Sobic006G150100 Sobic002G068000--Sobic009G032900 Sobic002G068000--Sobic003G349400 Sobic002G068000--Sobic010G158400 Sobic010G234500 Sobic010G234500 Sobic002G068000--Sobic010G234500 Sobic005G080600 Sobic005G080600 Sobic002G068000--Sobic005G080600 Sobic002G068000--Sobic009G259800 Sobic002G068000--Sobic003G426500 Sobic002G068000--Sobic005G216700 Sobic010G066800 Sobic010G066800 Sobic002G068000--Sobic010G066800 Sobic009G032900--Sobic002G068000 Sobic009G032900--Sobic004G351200 Sobic009G032900--Sobic005G216700 Sobic009G032900--Sobic010G158400 Sobic002G334000 Sobic002G334000 Sobic009G032900--Sobic002G334000 Sobic010G139100 Sobic010G139100 Sobic009G032900--Sobic010G139100 Sobic007G206800 Sobic007G206800 Sobic009G032900--Sobic007G206800 Sobic003G046700 Sobic003G046700 Sobic009G032900--Sobic003G046700 Sobic003G269900 Sobic003G269900 Sobic009G032900--Sobic003G269900 Sobic007G100700 Sobic007G100700 Sobic003G426500--Sobic007G100700 Sobic003G182200 Sobic003G182200 Sobic003G426500--Sobic003G182200 Sobic008G011700 Sobic008G011700 Sobic003G426500--Sobic008G011700 Sobic003G426500--Sobic010G066800 Sobic001G067100 Sobic001G067100 Sobic003G426500--Sobic001G067100 Sobic003G426500--Sobic002G068000 Sobic003G426500--Sobic009G259800 Sobic003G426500--Sobic010G158400 Sobic003G426500--Sobic003G349400 Sobic005G127400 Sobic005G127400 Sobic003G349400--Sobic005G127400 Sobic003G349400--Sobic010G234500 Sobic003G349400--Sobic002G068000 Sobic003G349400--Sobic006G150100 Sobic002G255000 Sobic002G255000 Sobic003G349400--Sobic002G255000 Sobic003G064800 Sobic003G064800 Sobic003G349400--Sobic003G064800 Sobic003G349400--Sobic010G066800 Sobic004G110700 Sobic004G110700 Sobic003G349400--Sobic004G110700 Sobic003G349400--Sobic007G100700 Sobic004G351200--Sobic005G216700 Sobic004G351200--Sobic009G032900 Sobic004G351200--Sobic010G139100 Sobic004G351200--Sobic002G334000 Sobic004G351200--Sobic002G068000 Sobic004G351200--Sobic010G158400 Sobic004G351200--Sobic007G206800 Sobic002G392100 Sobic002G392100 Sobic004G351200--Sobic002G392100 Sobic004G351200--Sobic006G150100 Sobic003G185300--Sobic009G259800 Sobic003G185300--Sobic002G068000 Sobic003G185300--Sobic009G032900 Sobic003G185300--Sobic010G158400 Sobic003G185300--Sobic005G080600 Sobic003G185300--Sobic003G426500 Sobic005G216500 Sobic005G216500 Sobic003G185300--Sobic005G216500 Sobic003G185300--Sobic003G269900 Sobic005G115300 Sobic005G115300 Sobic003G185300--Sobic005G115300 Sobic005G216700--Sobic004G351200 Sobic005G216700--Sobic009G032900 Sobic005G216700--Sobic010G139100 Sobic005G216700--Sobic002G068000 Sobic005G216700--Sobic002G334000 Sobic005G216700--Sobic007G206800 Sobic005G216700--Sobic010G158400 Sobic005G216700--Sobic005G080600 Sobic005G216700--Sobic003G046700 Sobic009G259800--Sobic005G080600 Sobic009G259800--Sobic003G185300 Sobic009G259800--Sobic007G206800 Sobic006G019700 Sobic006G019700 Sobic009G259800--Sobic006G019700 Sobic009G259800--Sobic007G100700 Sobic006G196400 Sobic006G196400 Sobic009G259800--Sobic006G196400 Sobic009G259800--Sobic002G068000 Sobic009G259800--Sobic010G234500 Sobic009G259800--Sobic003G426500 Sobic006G150100--Sobic003G349400 Sobic006G150100--Sobic005G127400 Sobic002G003700 Sobic002G003700 Sobic006G150100--Sobic002G003700 Sobic006G150100--Sobic004G110700 Sobic006G170600 Sobic006G170600 Sobic006G150100--Sobic006G170600 Sobic006G150100--Sobic002G068000 Sobic006G150100--Sobic010G234500 Sobic006G150100--Sobic010G158400 Sobic006G225500 Sobic006G225500 Sobic006G150100--Sobic006G225500
Octagon: transcription factors


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