Gene annotation
Transcriptome id Sobic.003G185300.1,Sobic.003G185300.2
Synonym Sb03g024870
Functional annotation dynein light chain type 1 domain containing protein, expressed
UniProt C5XMZ9
Pfam PF01221
Panther DB PTHR11886 PTHR11886:SF37
NCBI CDD KOG3430; Dynein light chain type 1
KEGG Orthology K10418; dynein light chain LC8-type
Gene Ontology GO:0007017; microtubule-based process GO:0005875microtubule associated complex


Orthologs (automatic annotation)
TAIR AT5G20110 : Dynein light chain type 1 family protein
RAP-DB (Rice) LOC_Os01g37490.1 : dynein light chain type 1 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036459
Brachypodium KQK08299
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G259800 zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
2 Sobic.002G068000 expressed protein -
3 Sobic.009G032900 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.010G158400 zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.005G080600 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
6 Sobic.003G426500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.005G216500 plant protein of unknown function domain containing protein, expressed -
8 Sobic.003G269900 OsSub12 - Putative Subtilisin homologue, expressed -
9 Sobic.005G115300 expressed protein -
10 Sobic.006G196400 U-box, putative, expressed -
11 Sobic.010G234500 O-methyltransferase, putative, expressed -
12 Sobic.004G312200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@WRKY32, expressed -
13 Sobic.003G349400 expressed protein -
14 Sobic.002G003400 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.002G115600 membrane protein, putative, expressed -
16 Sobic.005G175900 expressed protein -
17 Sobic.001G149400 ankyrin repeat domain-containing protein 50, putative, expressed -
18 Sobic.003G203600 aldehyde dehydrogenase, putative, expressed K12355: coniferyl-aldehyde dehydrogenase
19 Sobic.006G019700 transferase family protein, putative, expressed -
20 Sobic.005G216700 plant protein of unknown function domain containing protein, expressed -


Gene co-expression network
sample Sobic003G185300 Sobic003G185300 Sobic009G259800 Sobic009G259800 Sobic003G185300--Sobic009G259800 Sobic002G068000 Sobic002G068000 Sobic003G185300--Sobic002G068000 Sobic009G032900 Sobic009G032900 Sobic003G185300--Sobic009G032900 Sobic010G158400 Sobic010G158400 Sobic003G185300--Sobic010G158400 Sobic005G080600 Sobic005G080600 Sobic003G185300--Sobic005G080600 Sobic003G426500 Sobic003G426500 Sobic003G185300--Sobic003G426500 Sobic005G216500 Sobic005G216500 Sobic003G185300--Sobic005G216500 Sobic003G269900 Sobic003G269900 Sobic003G185300--Sobic003G269900 Sobic005G115300 Sobic005G115300 Sobic003G185300--Sobic005G115300 Sobic009G259800--Sobic005G080600 Sobic009G259800--Sobic003G185300 Sobic007G206800 Sobic007G206800 Sobic009G259800--Sobic007G206800 Sobic006G019700 Sobic006G019700 Sobic009G259800--Sobic006G019700 Sobic007G100700 Sobic007G100700 Sobic009G259800--Sobic007G100700 Sobic006G196400 Sobic006G196400 Sobic009G259800--Sobic006G196400 Sobic009G259800--Sobic002G068000 Sobic010G234500 Sobic010G234500 Sobic009G259800--Sobic010G234500 Sobic009G259800--Sobic003G426500 Sobic002G068000--Sobic009G032900 Sobic003G349400 Sobic003G349400 Sobic002G068000--Sobic003G349400 Sobic002G068000--Sobic010G158400 Sobic002G068000--Sobic010G234500 Sobic002G068000--Sobic005G080600 Sobic002G068000--Sobic009G259800 Sobic002G068000--Sobic003G426500 Sobic005G216700 Sobic005G216700 Sobic002G068000--Sobic005G216700 Sobic010G066800 Sobic010G066800 Sobic002G068000--Sobic010G066800 Sobic009G032900--Sobic002G068000 Sobic004G351200 Sobic004G351200 Sobic009G032900--Sobic004G351200 Sobic009G032900--Sobic005G216700 Sobic009G032900--Sobic010G158400 Sobic002G334000 Sobic002G334000 Sobic009G032900--Sobic002G334000 Sobic010G139100 Sobic010G139100 Sobic009G032900--Sobic010G139100 Sobic009G032900--Sobic007G206800 Sobic003G046700 Sobic003G046700 Sobic009G032900--Sobic003G046700 Sobic009G032900--Sobic003G269900 Sobic010G158400--Sobic002G068000 Sobic010G158400--Sobic009G032900 Sobic010G158400--Sobic003G426500 Sobic010G158400--Sobic003G349400 Sobic010G158400--Sobic004G351200 Sobic010G158400--Sobic003G185300 Sobic010G158400--Sobic005G216700 Sobic010G158400--Sobic009G259800 Sobic006G150100 Sobic006G150100 Sobic010G158400--Sobic006G150100 Sobic005G080600--Sobic007G206800 Sobic005G080600--Sobic006G196400 Sobic007G220400 Sobic007G220400 Sobic005G080600--Sobic007G220400 Sobic002G391400 Sobic002G391400 Sobic005G080600--Sobic002G391400 Sobic005G080600--Sobic009G259800 Sobic004G119800 Sobic004G119800 Sobic005G080600--Sobic004G119800 Sobic005G080600--Sobic002G334000 Sobic005G080600--Sobic002G068000 Sobic010G241900 Sobic010G241900 Sobic005G080600--Sobic010G241900 Sobic003G426500--Sobic007G100700 Sobic003G182200 Sobic003G182200 Sobic003G426500--Sobic003G182200 Sobic008G011700 Sobic008G011700 Sobic003G426500--Sobic008G011700 Sobic003G426500--Sobic010G066800 Sobic001G067100 Sobic001G067100 Sobic003G426500--Sobic001G067100 Sobic003G426500--Sobic002G068000 Sobic003G426500--Sobic009G259800 Sobic003G426500--Sobic010G158400 Sobic003G426500--Sobic003G349400 Sobic004G008600 Sobic004G008600 Sobic005G216500--Sobic004G008600 Sobic010G269000 Sobic010G269000 Sobic005G216500--Sobic010G269000 Sobic005G216500--Sobic003G046700 Sobic005G134200 Sobic005G134200 Sobic005G216500--Sobic005G134200 Sobic008G084900 Sobic008G084900 Sobic005G216500--Sobic008G084900 Sobic005G216500--Sobic007G220400 Sobic002G115600 Sobic002G115600 Sobic005G216500--Sobic002G115600 Sobic007G094100 Sobic007G094100 Sobic005G216500--Sobic007G094100 Sobic010G115000 Sobic010G115000 Sobic005G216500--Sobic010G115000 Sobic002G118900 Sobic002G118900 Sobic003G269900--Sobic002G118900 Sobic003G269900--Sobic010G115000 Sobic003G269900--Sobic010G139100 Sobic003G269900--Sobic009G032900 Sobic003G269900--Sobic005G216500 Sobic003G269900--Sobic002G115600 Sobic003G269900--Sobic010G158400 Sobic003G269900--Sobic005G216700 Sobic003G269900--Sobic003G185300 Sobic001G503000 Sobic001G503000 Sobic005G115300--Sobic001G503000 Sobic004G312200 Sobic004G312200 Sobic005G115300--Sobic004G312200 Sobic004G248500 Sobic004G248500 Sobic005G115300--Sobic004G248500 Sobic005G104200 Sobic005G104200 Sobic005G115300--Sobic005G104200 Sobic001G506600 Sobic001G506600 Sobic005G115300--Sobic001G506600 Sobic006G229100 Sobic006G229100 Sobic005G115300--Sobic006G229100 Sobic001G348800 Sobic001G348800 Sobic005G115300--Sobic001G348800 Sobic010G096700 Sobic010G096700 Sobic005G115300--Sobic010G096700 Sobic010G082000 Sobic010G082000 Sobic005G115300--Sobic010G082000
Octagon: transcription factors


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