Gene annotation
Transcriptome id Sobic.005G115300.1,Sobic.005G115300.2
Synonym Sb05g016720
Functional annotation expressed protein
UniProt C5Y2E6 , A0A1B6PRS5
Pfam PF13962 PF12796
Panther DB PTHR24177 PTHR24177:SF46
NCBI CDD KOG4412; 26S proteasome regulatory complex, subunit PSMD10
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G03670 : ankyrin repeat family protein
RAP-DB (Rice) LOC_Os11g24780.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS5A02G339200 , TraesCS5B02G337600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G503000 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
2 Sobic.004G312200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@WRKY32, expressed -
3 Sobic.004G248500 GDSL-like lipase/acylhydrolase, putative, expressed -
4 Sobic.005G104200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G506600 exostosin family domain containing protein, expressed -
6 Sobic.006G229100 receptor-like kinase, putative, expressed -
7 Sobic.001G348800 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
8 Sobic.010G096700 leaf senescence related protein, putative, expressed -
9 Sobic.010G082000 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
10 Sobic.005G175900 expressed protein -
11 Sobic.001G149400 ankyrin repeat domain-containing protein 50, putative, expressed -
12 Sobic.002G019100 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
13 Sobic.003G185300 dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
14 Sobic.003G215300 pleiotropic drug resistance protein, putative, expressed -
15 Sobic.006G196400 U-box, putative, expressed -
16 Sobic.002G259100 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@auxin responsive protein, putative, expressed K14488: SAUR family protein
17 Sobic.001G263300 glycosyltransferase, putative, expressed K18207: POMGNT2, protein O-mannose beta-1,4-N-acetylglucosaminyltransferase
18 Sobic.002G115600 membrane protein, putative, expressed -
19 Sobic.001G238500 similar to Putative uncharacterized protein(PubMedID : 29862293)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed K13691: pathogen-inducible salicylic acid glucosyltransferase
20 Sobic.008G138900 MLA12, putative, expressed -


Gene co-expression network
sample Sobic005G115300 Sobic005G115300 Sobic001G503000 Sobic001G503000 Sobic005G115300--Sobic001G503000 Sobic004G312200 Sobic004G312200 Sobic005G115300--Sobic004G312200 Sobic004G248500 Sobic004G248500 Sobic005G115300--Sobic004G248500 Sobic005G104200 Sobic005G104200 Sobic005G115300--Sobic005G104200 Sobic001G506600 Sobic001G506600 Sobic005G115300--Sobic001G506600 Sobic006G229100 Sobic006G229100 Sobic005G115300--Sobic006G229100 Sobic001G348800 Sobic001G348800 Sobic005G115300--Sobic001G348800 Sobic010G096700 Sobic010G096700 Sobic005G115300--Sobic010G096700 Sobic010G082000 Sobic010G082000 Sobic005G115300--Sobic010G082000 Sobic001G503000--Sobic001G506600 Sobic001G503000--Sobic010G096700 Sobic001G503000--Sobic005G115300 Sobic003G215300 Sobic003G215300 Sobic001G503000--Sobic003G215300 Sobic001G503000--Sobic005G104200 Sobic006G209000 Sobic006G209000 Sobic001G503000--Sobic006G209000 Sobic008G138900 Sobic008G138900 Sobic001G503000--Sobic008G138900 Sobic001G503000--Sobic010G082000 Sobic004G322000 Sobic004G322000 Sobic001G503000--Sobic004G322000 Sobic004G312200--Sobic005G115300 Sobic004G312200--Sobic001G503000 Sobic006G196400 Sobic006G196400 Sobic004G312200--Sobic006G196400 Sobic005G175900 Sobic005G175900 Sobic004G312200--Sobic005G175900 Sobic004G312200--Sobic010G082000 Sobic003G185300 Sobic003G185300 Sobic004G312200--Sobic003G185300 Sobic001G263300 Sobic001G263300 Sobic004G312200--Sobic001G263300 Sobic004G312200--Sobic003G215300 Sobic001G149400 Sobic001G149400 Sobic004G312200--Sobic001G149400 Sobic004G248500--Sobic005G115300 Sobic004G248500--Sobic001G503000 Sobic001G464300 Sobic001G464300 Sobic004G248500--Sobic001G464300 Sobic007G109600 Sobic007G109600 Sobic004G248500--Sobic007G109600 Sobic004G248500--Sobic004G312200 Sobic004G248500--Sobic001G348800 Sobic006G183900 Sobic006G183900 Sobic004G248500--Sobic006G183900 Sobic004G248500--Sobic005G104200 Sobic004G248500--Sobic001G263300 Sobic001G238500 Sobic001G238500 Sobic005G104200--Sobic001G238500 Sobic005G104200--Sobic001G506600 Sobic002G019100 Sobic002G019100 Sobic005G104200--Sobic002G019100 Sobic005G104200--Sobic001G503000 Sobic006G117500 Sobic006G117500 Sobic005G104200--Sobic006G117500 Sobic004G126500 Sobic004G126500 Sobic005G104200--Sobic004G126500 Sobic006G009700 Sobic006G009700 Sobic005G104200--Sobic006G009700 Sobic002G411000 Sobic002G411000 Sobic005G104200--Sobic002G411000 Sobic005G104200--Sobic001G348800 Sobic001G506600--Sobic010G096700 Sobic001G506600--Sobic001G503000 Sobic001G506600--Sobic005G104200 Sobic002G029600 Sobic002G029600 Sobic001G506600--Sobic002G029600 Sobic001G506600--Sobic002G411000 Sobic001G506600--Sobic002G019100 Sobic001G506600--Sobic004G322000 Sobic001G506600--Sobic006G209000 Sobic001G506600--Sobic003G215300 Sobic007G090472 Sobic007G090472 Sobic006G229100--Sobic007G090472 Sobic006G229100--Sobic010G082000 Sobic006G229100--Sobic005G115300 Sobic001G360500 Sobic001G360500 Sobic006G229100--Sobic001G360500 Sobic006G229100--Sobic001G503000 Sobic003G287200 Sobic003G287200 Sobic006G229100--Sobic003G287200 Sobic006G229100--Sobic010G096700 Sobic006G135300 Sobic006G135300 Sobic006G229100--Sobic006G135300 Sobic006G229100--Sobic001G149400 Sobic001G348800--Sobic005G104200 Sobic001G348800--Sobic005G115300 Sobic001G348800--Sobic001G238500 Sobic001G348800--Sobic004G126500 Sobic002G238700 Sobic002G238700 Sobic001G348800--Sobic002G238700 Sobic001G348800--Sobic001G503000 Sobic001G348800--Sobic004G248500 Sobic001G348800--Sobic002G019100 Sobic001G348800--Sobic006G009700 Sobic010G096700--Sobic001G506600 Sobic010G096700--Sobic001G503000 Sobic010G096700--Sobic006G209000 Sobic010G096700--Sobic004G322000 Sobic010G096700--Sobic003G215300 Sobic010G096700--Sobic005G104200 Sobic005G066300 Sobic005G066300 Sobic010G096700--Sobic005G066300 Sobic001G274400 Sobic001G274400 Sobic010G096700--Sobic001G274400 Sobic010G096700--Sobic005G115300 Sobic006G092700 Sobic006G092700 Sobic010G082000--Sobic006G092700 Sobic003G240400 Sobic003G240400 Sobic010G082000--Sobic003G240400 Sobic010G082000--Sobic006G135300 Sobic010G152400 Sobic010G152400 Sobic010G082000--Sobic010G152400 Sobic006G028500 Sobic006G028500 Sobic010G082000--Sobic006G028500 Sobic010G082000--Sobic003G215300 Sobic006G019700 Sobic006G019700 Sobic010G082000--Sobic006G019700 Sobic007G073000 Sobic007G073000 Sobic010G082000--Sobic007G073000 Sobic010G082000--Sobic006G196400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.