Gene annotation
Transcriptome id Sobic.005G104200.2
Synonym ATCPNIFS, CPNIFS, ATNFS2, SUFS, ATSUFS, Sb05g009410
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6PRG0
Pfam PF00266
Panther DB PTHR11601 PTHR11601:SF46
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G08490 : chloroplastic NIFS-like cysteine desulfurase
RAP-DB (Rice) LOC_Os12g08850.1 : expressed protein
MaizeGDB (Corn) Zm00025a027713 , Zm00025a029625
Brachypodium KQJ89002 , PNT65335
Barley HORVU4Hr1G016990.3 , HORVU4Hr1G016990.2 , HORVU4Hr1G016990.1 , HORVU4Hr1G016990.6 , HORVU4Hr1G016990.5 , HORVU4Hr1G016990.4 , HORVU2Hr1G086050.3 , HORVU2Hr1G086050.2 , HORVU3Hr1G069210.1
Wheat TraesCS2A02G355700 , TraesCS4B02G105600 , TraesCS2D02G352600 , TraesCS3A02G282600 , TraesCS4D02G102400 , TraesCS4A02G201400 , TraesCS2D02G384500 , TraesCS2D02G139200
Populus -


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cDNA sequences
Sobic.005G104200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G238500 similar to Putative uncharacterized protein(PubMedID : 29862293)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed K13691: pathogen-inducible salicylic acid glucosyltransferase
2 Sobic.001G506600 exostosin family domain containing protein, expressed -
3 Sobic.002G019100 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
4 Sobic.001G503000 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
5 Sobic.006G117500 polygalacturonase inhibitor 1 precursor, putative, expressed -
6 Sobic.004G126500 - -
7 Sobic.006G009700 expressed protein -
8 Sobic.002G411000 AP2 domain containing protein, expressed -
9 Sobic.001G348800 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
10 Sobic.005G115300 expressed protein -
11 Sobic.010G274400 reticuline oxidase-like protein precursor, putative, expressed -
12 Sobic.010G096700 leaf senescence related protein, putative, expressed -
13 Sobic.001G506700 exostosin family domain containing protein, expressed -
14 Sobic.006G108300 expressed protein -
15 Sobic.005G066300 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
16 Sobic.006G209000 Protein transferase (Os)(PubMedID : 27208977)@transferase family domain containing protein, expressed -
17 Sobic.002G238700 - -
18 Sobic.005G071900 expressed protein K13457: RPM1, disease resistance protein RPM1
19 Sobic.004G156250 - -
20 Sobic.009G015166 - -


Gene co-expression network
sample Sobic005G104200 Sobic005G104200 Sobic001G238500 Sobic001G238500 Sobic005G104200--Sobic001G238500 Sobic001G506600 Sobic001G506600 Sobic005G104200--Sobic001G506600 Sobic002G019100 Sobic002G019100 Sobic005G104200--Sobic002G019100 Sobic001G503000 Sobic001G503000 Sobic005G104200--Sobic001G503000 Sobic006G117500 Sobic006G117500 Sobic005G104200--Sobic006G117500 Sobic004G126500 Sobic004G126500 Sobic005G104200--Sobic004G126500 Sobic006G009700 Sobic006G009700 Sobic005G104200--Sobic006G009700 Sobic002G411000 Sobic002G411000 Sobic005G104200--Sobic002G411000 Sobic001G348800 Sobic001G348800 Sobic005G104200--Sobic001G348800 Sobic001G238500--Sobic004G126500 Sobic001G238500--Sobic005G104200 Sobic001G238500--Sobic006G009700 Sobic002G238700 Sobic002G238700 Sobic001G238500--Sobic002G238700 Sobic001G238500--Sobic002G019100 Sobic001G238500--Sobic001G348800 Sobic001G238500--Sobic002G411000 Sobic009G015166 Sobic009G015166 Sobic001G238500--Sobic009G015166 Sobic001G506700 Sobic001G506700 Sobic001G238500--Sobic001G506700 Sobic010G096700 Sobic010G096700 Sobic001G506600--Sobic010G096700 Sobic001G506600--Sobic001G503000 Sobic001G506600--Sobic005G104200 Sobic002G029600 Sobic002G029600 Sobic001G506600--Sobic002G029600 Sobic001G506600--Sobic002G411000 Sobic001G506600--Sobic002G019100 Sobic004G322000 Sobic004G322000 Sobic001G506600--Sobic004G322000 Sobic006G209000 Sobic006G209000 Sobic001G506600--Sobic006G209000 Sobic003G215300 Sobic003G215300 Sobic001G506600--Sobic003G215300 Sobic002G019100--Sobic006G009700 Sobic002G019100--Sobic005G104200 Sobic009G060700 Sobic009G060700 Sobic002G019100--Sobic009G060700 Sobic006G108300 Sobic006G108300 Sobic002G019100--Sobic006G108300 Sobic008G138700 Sobic008G138700 Sobic002G019100--Sobic008G138700 Sobic008G084900 Sobic008G084900 Sobic002G019100--Sobic008G084900 Sobic002G019100--Sobic001G506600 Sobic002G019100--Sobic001G506700 Sobic002G019100--Sobic002G029600 Sobic001G503000--Sobic001G506600 Sobic001G503000--Sobic010G096700 Sobic005G115300 Sobic005G115300 Sobic001G503000--Sobic005G115300 Sobic001G503000--Sobic003G215300 Sobic001G503000--Sobic005G104200 Sobic001G503000--Sobic006G209000 Sobic008G138900 Sobic008G138900 Sobic001G503000--Sobic008G138900 Sobic010G082000 Sobic010G082000 Sobic001G503000--Sobic010G082000 Sobic001G503000--Sobic004G322000 Sobic006G117500--Sobic005G104200 Sobic010G274400 Sobic010G274400 Sobic006G117500--Sobic010G274400 Sobic004G108800 Sobic004G108800 Sobic006G117500--Sobic004G108800 Sobic006G117500--Sobic001G506600 Sobic006G117500--Sobic009G015166 Sobic005G066300 Sobic005G066300 Sobic006G117500--Sobic005G066300 Sobic006G117500--Sobic010G096700 Sobic006G205500 Sobic006G205500 Sobic006G117500--Sobic006G205500 Sobic002G163200 Sobic002G163200 Sobic006G117500--Sobic002G163200 Sobic004G126500--Sobic001G238500 Sobic004G126500--Sobic006G009700 Sobic004G126500--Sobic005G104200 Sobic004G126500--Sobic002G238700 Sobic004G126500--Sobic002G019100 Sobic004G126500--Sobic001G348800 Sobic004G126500--Sobic008G084900 Sobic004G312500 Sobic004G312500 Sobic004G126500--Sobic004G312500 Sobic004G126500--Sobic009G015166 Sobic006G009700--Sobic008G138700 Sobic006G009700--Sobic004G312500 Sobic005G071900 Sobic005G071900 Sobic006G009700--Sobic005G071900 Sobic006G009700--Sobic002G019100 Sobic006G009700--Sobic004G126500 Sobic006G009700--Sobic001G238500 Sobic005G066500 Sobic005G066500 Sobic006G009700--Sobic005G066500 Sobic006G009700--Sobic002G238700 Sobic006G009700--Sobic006G108300 Sobic002G411000--Sobic005G066300 Sobic002G411000--Sobic006G108300 Sobic002G411000--Sobic004G312500 Sobic002G411000--Sobic005G071900 Sobic002G411000--Sobic006G009700 Sobic002G411000--Sobic005G066500 Sobic002G411000--Sobic001G506700 Sobic002G411000--Sobic001G506600 Sobic002G411000--Sobic010G274400 Sobic001G348800--Sobic005G104200 Sobic001G348800--Sobic005G115300 Sobic001G348800--Sobic001G238500 Sobic001G348800--Sobic004G126500 Sobic001G348800--Sobic002G238700 Sobic001G348800--Sobic001G503000 Sobic004G248500 Sobic004G248500 Sobic001G348800--Sobic004G248500 Sobic001G348800--Sobic002G019100 Sobic001G348800--Sobic006G009700
Octagon: transcription factors


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