Gene annotation
Transcriptome id Sobic.002G411000.1
Synonym PUCHI
Functional annotation AP2 domain containing protein, expressed
UniProt A0A1B6QG58
Pfam PF00847
Panther DB PTHR31677 PTHR31677:SF22
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G18560 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os07g47330.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a015392 , Zm00025a049099
Brachypodium KQK14788
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G066300 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
2 Sobic.006G108300 expressed protein -
3 Sobic.004G312500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@nitrate reductase, putative, expressed K10534: nitrate reductase (NAD(P)H)
4 Sobic.005G071900 expressed protein K13457: RPM1, disease resistance protein RPM1
5 Sobic.006G009700 expressed protein -
6 Sobic.005G066500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
7 Sobic.001G506700 exostosin family domain containing protein, expressed -
8 Sobic.001G506600 exostosin family domain containing protein, expressed -
9 Sobic.010G274400 reticuline oxidase-like protein precursor, putative, expressed -
10 Sobic.005G065700 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
11 Sobic.005G104200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.008G138700 MLA12, putative, expressed -
13 Sobic.005G110511 - -
14 Sobic.008G138900 MLA12, putative, expressed -
15 Sobic.005G197350 - -
16 Sobic.006G209000 Protein transferase (Os)(PubMedID : 27208977)@transferase family domain containing protein, expressed -
17 Sobic.001G238500 similar to Putative uncharacterized protein(PubMedID : 29862293)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed K13691: pathogen-inducible salicylic acid glucosyltransferase
18 Sobic.007G154100 aspartic proteinase nepenthesin precursor, putative, expressed -
19 Sobic.002G019100 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
20 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -


Gene co-expression network
sample Sobic002G411000 Sobic002G411000 Sobic005G066300 Sobic005G066300 Sobic002G411000--Sobic005G066300 Sobic006G108300 Sobic006G108300 Sobic002G411000--Sobic006G108300 Sobic004G312500 Sobic004G312500 Sobic002G411000--Sobic004G312500 Sobic005G071900 Sobic005G071900 Sobic002G411000--Sobic005G071900 Sobic006G009700 Sobic006G009700 Sobic002G411000--Sobic006G009700 Sobic005G066500 Sobic005G066500 Sobic002G411000--Sobic005G066500 Sobic001G506700 Sobic001G506700 Sobic002G411000--Sobic001G506700 Sobic001G506600 Sobic001G506600 Sobic002G411000--Sobic001G506600 Sobic010G274400 Sobic010G274400 Sobic002G411000--Sobic010G274400 Sobic005G066300--Sobic002G411000 Sobic005G066300--Sobic004G312500 Sobic005G066300--Sobic001G506700 Sobic005G066300--Sobic005G071900 Sobic010G096700 Sobic010G096700 Sobic005G066300--Sobic010G096700 Sobic005G197350 Sobic005G197350 Sobic005G066300--Sobic005G197350 Sobic006G209000 Sobic006G209000 Sobic005G066300--Sobic006G209000 Sobic002G081850 Sobic002G081850 Sobic005G066300--Sobic002G081850 Sobic005G066300--Sobic005G066500 Sobic006G108300--Sobic004G312500 Sobic006G108300--Sobic005G071900 Sobic007G154100 Sobic007G154100 Sobic006G108300--Sobic007G154100 Sobic006G108300--Sobic002G411000 Sobic006G108300--Sobic006G009700 Sobic003G079100 Sobic003G079100 Sobic006G108300--Sobic003G079100 Sobic006G108300--Sobic006G209000 Sobic002G029600 Sobic002G029600 Sobic006G108300--Sobic002G029600 Sobic002G019100 Sobic002G019100 Sobic006G108300--Sobic002G019100 Sobic004G312500--Sobic005G071900 Sobic004G312500--Sobic006G108300 Sobic005G110511 Sobic005G110511 Sobic004G312500--Sobic005G110511 Sobic004G312500--Sobic006G009700 Sobic004G312500--Sobic007G154100 Sobic004G312500--Sobic005G066500 Sobic008G138700 Sobic008G138700 Sobic004G312500--Sobic008G138700 Sobic005G065700 Sobic005G065700 Sobic004G312500--Sobic005G065700 Sobic004G312500--Sobic002G411000 Sobic005G071900--Sobic005G065700 Sobic005G071900--Sobic004G312500 Sobic005G071900--Sobic005G066500 Sobic005G071900--Sobic005G110511 Sobic005G071900--Sobic006G108300 Sobic005G071900--Sobic006G009700 Sobic005G071900--Sobic008G138700 Sobic005G071900--Sobic003G079100 Sobic005G071900--Sobic002G029600 Sobic006G009700--Sobic008G138700 Sobic006G009700--Sobic004G312500 Sobic006G009700--Sobic005G071900 Sobic006G009700--Sobic002G019100 Sobic004G126500 Sobic004G126500 Sobic006G009700--Sobic004G126500 Sobic001G238500 Sobic001G238500 Sobic006G009700--Sobic001G238500 Sobic006G009700--Sobic005G066500 Sobic002G238700 Sobic002G238700 Sobic006G009700--Sobic002G238700 Sobic006G009700--Sobic006G108300 Sobic005G066500--Sobic005G110511 Sobic005G066500--Sobic005G065700 Sobic005G066500--Sobic005G071900 Sobic005G066500--Sobic008G138700 Sobic005G066500--Sobic004G312500 Sobic005G066500--Sobic005G197350 Sobic005G066500--Sobic006G009700 Sobic002G019000 Sobic002G019000 Sobic005G066500--Sobic002G019000 Sobic005G066500--Sobic002G411000 Sobic001G506700--Sobic002G411000 Sobic001G506700--Sobic005G065700 Sobic001G506700--Sobic002G019100 Sobic001G506700--Sobic005G071900 Sobic001G506700--Sobic001G506600 Sobic001G506700--Sobic006G209000 Sobic001G506700--Sobic006G009700 Sobic001G506700--Sobic005G066300 Sobic001G503000 Sobic001G503000 Sobic001G506700--Sobic001G503000 Sobic001G506600--Sobic010G096700 Sobic001G506600--Sobic001G503000 Sobic005G104200 Sobic005G104200 Sobic001G506600--Sobic005G104200 Sobic001G506600--Sobic002G029600 Sobic001G506600--Sobic002G411000 Sobic001G506600--Sobic002G019100 Sobic004G322000 Sobic004G322000 Sobic001G506600--Sobic004G322000 Sobic001G506600--Sobic006G209000 Sobic003G215300 Sobic003G215300 Sobic001G506600--Sobic003G215300 Sobic010G274400--Sobic002G411000 Sobic010G274400--Sobic005G104200 Sobic006G117500 Sobic006G117500 Sobic010G274400--Sobic006G117500 Sobic010G274400--Sobic001G506600 Sobic010G274400--Sobic005G066300 Sobic010G274400--Sobic001G503000 Sobic010G274400--Sobic010G096700 Sobic010G274400--Sobic006G108300 Sobic010G274400--Sobic001G506700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.