Gene annotation
| Transcriptome id | Sobic.006G209000.1 |
|---|---|
| Synonym | Sb06g027990 |
| Functional annotation | Protein transferase (Os) (PubMedID : 27208977) transferase family domain containing protein, expressed |
| UniProt | C5YFL2 |
| Pfam | PF02458 |
| Panther DB | PTHR31642 PTHR31642:SF30 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0016747; transferase activity, transferring acyl groups other than amino-acyl groups |
Orthologs (automatic annotation)
| TAIR | AT1G32910 : HXXXD-type acyl-transferase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g51980.1 : transferase family domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a009852 , Zm00025a056986 |
| Brachypodium | KQJ84480 , KQJ84481 , KQJ84479 |
| Barley | HORVU2Hr1G100230.8 , HORVU2Hr1G100230.1 , HORVU2Hr1G100230.2 , HORVU2Hr1G100230.3 , HORVU2Hr1G100230.4 , HORVU2Hr1G100230.5 , HORVU2Hr1G100230.6 , HORVU2Hr1G100230.7 , HORVU2Hr1G100210.2 , HORVU2Hr1G100210.3 , HORVU2Hr1G100210.1 , HORVU2Hr1G100110.1 , HORVU2Hr1G100110.3 , HORVU2Hr1G100110.2 , HORVU2Hr1G100110.5 , HORVU2Hr1G100110.4 , HORVU2Hr1G100110.6 |
| Wheat | TraesCS2D02G427000 , TraesCS2B02G449600 , TraesCS2A02G429200 , TraesCS2B02G449700 , TraesCS2D02G426800 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.007G154100 | aspartic proteinase nepenthesin precursor, putative, expressed | - |
| 2 | Sobic.006G108300 | expressed protein | - |
| 3 | Sobic.005G071900 | expressed protein | K13457: RPM1, disease resistance protein RPM1 |
| 4 | Sobic.004G312500 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@nitrate reductase, putative, expressed | K10534: nitrate reductase (NAD(P)H) |
| 5 | Sobic.001G503000 | "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 6 | Sobic.002G029600 | CBS domain containing membrane protein, putative, expressed | K00088: IMPDH, IMP dehydrogenase |
| 7 | Sobic.010G096700 | leaf senescence related protein, putative, expressed | - |
| 8 | Sobic.001G506600 | exostosin family domain containing protein, expressed | - |
| 9 | Sobic.009G106100 | GCRP9 - Glycine and cysteine rich family protein precursor, expressed | - |
| 10 | Sobic.001G506700 | exostosin family domain containing protein, expressed | - |
| 11 | Sobic.008G138900 | MLA12, putative, expressed | - |
| 12 | Sobic.002G411000 | AP2 domain containing protein, expressed | - |
| 13 | Sobic.005G066300 | glycine-rich cell wall structural protein 2 precursor, putative, expressed | - |
| 14 | Sobic.005G065700 | glycine-rich cell wall structural protein 2 precursor, putative, expressed | - |
| 15 | Sobic.005G182800 | NB-ARC domain containing protein, expressed | - |
| 16 | Sobic.002G259100 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@auxin responsive protein, putative, expressed | K14488: SAUR family protein |
| 17 | Sobic.010G152500 | glycosyltransferase, putative, expressed | - |
| 18 | Sobic.003G079100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed | - |
| 19 | Sobic.002G019100 | xyloglucan fucosyltransferase, putative, expressed | K13681: xyloglucan fucosyltransferase |
| 20 | Sobic.003G215300 | pleiotropic drug resistance protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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