Gene annotation
Transcriptome id Sobic.008G138900.1
Synonym Sb08g018980, RPS3, RPM1
Functional annotation MLA12, putative, expressed
UniProt C5YQA2
Pfam PF00931
Panther DB PTHR23155 PTHR23155:SF578
NCBI CDD KOG4658; Apoptotic ATPase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07040 : NB-ARC domain-containing disease resistance protein
RAP-DB (Rice) LOC_Os12g17480.1 : MLA12, putative, expressed
MaizeGDB (Corn) -
Brachypodium PNT65567 , PNT65564 , PNT65565 , PNT65566 , PNT65563 , PNT65568
Barley HORVU7Hr1G100280.1 , HORVU7Hr1G100280.2 , HORVU6Hr1G013320.1 , HORVU6Hr1G013320.3 , HORVU6Hr1G013320.2 , HORVU6Hr1G013320.5 , HORVU6Hr1G013320.4 , HORVU6Hr1G013320.7 , HORVU6Hr1G013320.6 , HORVU7Hr1G000630.2 , HORVU7Hr1G000630.3 , HORVU7Hr1G000630.1 , HORVU7Hr1G000630.4 , HORVU7Hr1G000630.5
Wheat TraesCS7D02G496900 , TraesCS7D02G005500 , TraesCS7D02G020800 , TraesCS7D02G020800 , TraesCS7D02G020800 , TraesCS6B02G100000 , TraesCS6B02G100000 , TraesCS6B02G100000 , TraesCS6B02G100000 , TraesCS4A02G490300 , TraesCS6B02G100000 , TraesCS4A02G493600 , TraesCSU02G133300 , TraesCSU02G133300 , TraesCS4A02G486600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G182800 NB-ARC domain containing protein, expressed -
2 Sobic.001G503000 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
3 Sobic.003G079100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@muconate cycloisomerase, putative, expressed -
4 Sobic.004G014600 disease resistance protein RGA2, putative, expressed -
5 Sobic.005G065700 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
6 Sobic.002G195600 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
7 Sobic.002G029600 CBS domain containing membrane protein, putative, expressed K00088: IMPDH, IMP dehydrogenase
8 Sobic.007G154100 aspartic proteinase nepenthesin precursor, putative, expressed -
9 Sobic.001G506600 exostosin family domain containing protein, expressed -
10 Sobic.002G411000 AP2 domain containing protein, expressed -
11 Sobic.006G209000 Protein transferase (Os)(PubMedID : 27208977)@transferase family domain containing protein, expressed -
12 Sobic.001G506700 exostosin family domain containing protein, expressed -
13 Sobic.002G019000 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase
14 Sobic.003G215300 pleiotropic drug resistance protein, putative, expressed -
15 Sobic.005G071900 expressed protein K13457: RPM1, disease resistance protein RPM1
16 Sobic.005G182900 NBS-LRR disease resistance protein, putative, expressed -
17 Sobic.002G115600 membrane protein, putative, expressed -
18 Sobic.005G216600 plant protein of unknown function domain containing protein, expressed -
19 Sobic.006G031100 CAP (Cysteine-rich secretory proteins("PubMedID : 26759170,PubMedID : 24597475")@SCP-like extracellular protein, expressed -
20 Sobic.007G073000 - -


Gene co-expression network
sample Sobic008G138900 Sobic008G138900 Sobic005G182800 Sobic005G182800 Sobic008G138900--Sobic005G182800 Sobic001G503000 Sobic001G503000 Sobic008G138900--Sobic001G503000 Sobic003G079100 Sobic003G079100 Sobic008G138900--Sobic003G079100 Sobic004G014600 Sobic004G014600 Sobic008G138900--Sobic004G014600 Sobic005G065700 Sobic005G065700 Sobic008G138900--Sobic005G065700 Sobic002G195600 Sobic002G195600 Sobic008G138900--Sobic002G195600 Sobic002G029600 Sobic002G029600 Sobic008G138900--Sobic002G029600 Sobic007G154100 Sobic007G154100 Sobic008G138900--Sobic007G154100 Sobic001G506600 Sobic001G506600 Sobic008G138900--Sobic001G506600 Sobic005G182900 Sobic005G182900 Sobic005G182800--Sobic005G182900 Sobic005G182800--Sobic004G014600 Sobic005G182800--Sobic003G079100 Sobic005G182800--Sobic008G138900 Sobic006G031100 Sobic006G031100 Sobic005G182800--Sobic006G031100 Sobic002G019000 Sobic002G019000 Sobic005G182800--Sobic002G019000 Sobic005G216600 Sobic005G216600 Sobic005G182800--Sobic005G216600 Sobic004G009200 Sobic004G009200 Sobic005G182800--Sobic004G009200 Sobic005G182800--Sobic005G065700 Sobic001G503000--Sobic001G506600 Sobic010G096700 Sobic010G096700 Sobic001G503000--Sobic010G096700 Sobic005G115300 Sobic005G115300 Sobic001G503000--Sobic005G115300 Sobic003G215300 Sobic003G215300 Sobic001G503000--Sobic003G215300 Sobic005G104200 Sobic005G104200 Sobic001G503000--Sobic005G104200 Sobic006G209000 Sobic006G209000 Sobic001G503000--Sobic006G209000 Sobic001G503000--Sobic008G138900 Sobic010G082000 Sobic010G082000 Sobic001G503000--Sobic010G082000 Sobic004G322000 Sobic004G322000 Sobic001G503000--Sobic004G322000 Sobic003G079100--Sobic002G029600 Sobic003G079100--Sobic004G014600 Sobic003G079100--Sobic005G065700 Sobic002G029500 Sobic002G029500 Sobic003G079100--Sobic002G029500 Sobic003G079100--Sobic005G182800 Sobic010G213600 Sobic010G213600 Sobic003G079100--Sobic010G213600 Sobic003G079100--Sobic005G182900 Sobic010G152500 Sobic010G152500 Sobic003G079100--Sobic010G152500 Sobic005G071900 Sobic005G071900 Sobic003G079100--Sobic005G071900 Sobic003G441601 Sobic003G441601 Sobic004G014600--Sobic003G441601 Sobic007G090600 Sobic007G090600 Sobic004G014600--Sobic007G090600 Sobic009G165100 Sobic009G165100 Sobic004G014600--Sobic009G165100 Sobic004G014600--Sobic005G182800 Sobic004G014600--Sobic003G079100 Sobic004G014600--Sobic010G213600 Sobic004G014600--Sobic005G182900 Sobic004G014600--Sobic006G031100 Sobic002G289500 Sobic002G289500 Sobic004G014600--Sobic002G289500 Sobic005G065700--Sobic002G019000 Sobic005G065700--Sobic005G071900 Sobic005G065700--Sobic005G182900 Sobic005G066500 Sobic005G066500 Sobic005G065700--Sobic005G066500 Sobic005G110511 Sobic005G110511 Sobic005G065700--Sobic005G110511 Sobic005G065700--Sobic010G213600 Sobic005G065700--Sobic003G079100 Sobic008G033100 Sobic008G033100 Sobic005G065700--Sobic008G033100 Sobic010G242800 Sobic010G242800 Sobic005G065700--Sobic010G242800 Sobic007G073000 Sobic007G073000 Sobic002G195600--Sobic007G073000 Sobic006G196400 Sobic006G196400 Sobic002G195600--Sobic006G196400 Sobic002G195600--Sobic008G138900 Sobic002G195600--Sobic003G215300 Sobic003G240400 Sobic003G240400 Sobic002G195600--Sobic003G240400 Sobic002G195600--Sobic004G014600 Sobic002G195600--Sobic007G090600 Sobic006G092700 Sobic006G092700 Sobic002G195600--Sobic006G092700 Sobic006G135300 Sobic006G135300 Sobic002G195600--Sobic006G135300 Sobic002G029600--Sobic003G079100 Sobic002G029600--Sobic006G031100 Sobic002G029600--Sobic003G215300 Sobic002G029600--Sobic004G014600 Sobic002G029600--Sobic005G065700 Sobic002G029600--Sobic010G152500 Sobic002G029600--Sobic005G071900 Sobic002G029600--Sobic007G090600 Sobic002G029600--Sobic001G506600 Sobic004G312500 Sobic004G312500 Sobic007G154100--Sobic004G312500 Sobic007G154100--Sobic006G209000 Sobic006G108300 Sobic006G108300 Sobic007G154100--Sobic006G108300 Sobic007G154100--Sobic004G009200 Sobic007G154100--Sobic010G152500 Sobic007G154100--Sobic005G071900 Sobic007G154100--Sobic003G079100 Sobic009G106100 Sobic009G106100 Sobic007G154100--Sobic009G106100 Sobic007G154100--Sobic005G182800 Sobic001G506600--Sobic010G096700 Sobic001G506600--Sobic001G503000 Sobic001G506600--Sobic005G104200 Sobic001G506600--Sobic002G029600 Sobic002G411000 Sobic002G411000 Sobic001G506600--Sobic002G411000 Sobic002G019100 Sobic002G019100 Sobic001G506600--Sobic002G019100 Sobic001G506600--Sobic004G322000 Sobic001G506600--Sobic006G209000 Sobic001G506600--Sobic003G215300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.