Gene annotation
Transcriptome id Sobic.004G248500.1
Synonym Sb04g028830
Functional annotation GDSL-like lipase/acylhydrolase, putative, expressed
UniProt C5XZB4
Pfam PF00657
Panther DB PTHR22835 PTHR22835:SF278
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016788; hydrolase activity, acting on ester bonds


Orthologs (automatic annotation)
TAIR AT5G37690 : SGNH hydrolase-type esterase superfamily protein
RAP-DB (Rice) LOC_Os06g14630.1 : GDSL-like lipase/acylhydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a032662 , Zm00025a050376 , Zm00025a042710
Brachypodium KQK01589 , KQK18689
Barley HORVU6Hr1G073530.6 , HORVU6Hr1G073530.4 , HORVU6Hr1G073530.5 , HORVU6Hr1G073530.3 , HORVU6Hr1G073530.1
Wheat TraesCS6D02G275400 , TraesCS7B02G112100 , TraesCS7A02G204900 , TraesCS6A02G294300 , TraesCS6A02G294800 , TraesCS6A02G294800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G115300 expressed protein -
2 Sobic.001G503000 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
3 Sobic.001G464300 helix-loop-helix DNA-binding domain containing protein, expressed -
4 Sobic.007G109600 expressed protein -
5 Sobic.004G312200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@WRKY32, expressed -
6 Sobic.001G348800 OsSCP18 - Putative Serine Carboxypeptidase homologue, expressed K09646: serine carboxypeptidase 1
7 Sobic.006G183900 cytochrome P450, putative, expressed -
8 Sobic.005G104200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.001G263300 glycosyltransferase, putative, expressed K18207: POMGNT2, protein O-mannose beta-1,4-N-acetylglucosaminyltransferase
10 Sobic.005G097600 gibberellin 20 oxidase 2, putative, expressed -
11 Sobic.001G212451 - -
12 Sobic.001G149400 ankyrin repeat domain-containing protein 50, putative, expressed -
13 Sobic.007G090472 - -
14 Sobic.003G185300 dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
15 Sobic.001G506600 exostosin family domain containing protein, expressed -
16 Sobic.005G175900 expressed protein -
17 Sobic.008G133000 expressed protein -
18 Sobic.002G003400 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.003G215300 pleiotropic drug resistance protein, putative, expressed -
20 Sobic.010G082000 xyloglucan fucosyltransferase, putative, expressed K13681: xyloglucan fucosyltransferase


Gene co-expression network
sample Sobic004G248500 Sobic004G248500 Sobic005G115300 Sobic005G115300 Sobic004G248500--Sobic005G115300 Sobic001G503000 Sobic001G503000 Sobic004G248500--Sobic001G503000 Sobic001G464300 Sobic001G464300 Sobic004G248500--Sobic001G464300 Sobic007G109600 Sobic007G109600 Sobic004G248500--Sobic007G109600 Sobic004G312200 Sobic004G312200 Sobic004G248500--Sobic004G312200 Sobic001G348800 Sobic001G348800 Sobic004G248500--Sobic001G348800 Sobic006G183900 Sobic006G183900 Sobic004G248500--Sobic006G183900 Sobic005G104200 Sobic005G104200 Sobic004G248500--Sobic005G104200 Sobic001G263300 Sobic001G263300 Sobic004G248500--Sobic001G263300 Sobic005G115300--Sobic001G503000 Sobic005G115300--Sobic004G312200 Sobic005G115300--Sobic004G248500 Sobic005G115300--Sobic005G104200 Sobic001G506600 Sobic001G506600 Sobic005G115300--Sobic001G506600 Sobic006G229100 Sobic006G229100 Sobic005G115300--Sobic006G229100 Sobic005G115300--Sobic001G348800 Sobic010G096700 Sobic010G096700 Sobic005G115300--Sobic010G096700 Sobic010G082000 Sobic010G082000 Sobic005G115300--Sobic010G082000 Sobic001G503000--Sobic001G506600 Sobic001G503000--Sobic010G096700 Sobic001G503000--Sobic005G115300 Sobic003G215300 Sobic003G215300 Sobic001G503000--Sobic003G215300 Sobic001G503000--Sobic005G104200 Sobic006G209000 Sobic006G209000 Sobic001G503000--Sobic006G209000 Sobic008G138900 Sobic008G138900 Sobic001G503000--Sobic008G138900 Sobic001G503000--Sobic010G082000 Sobic004G322000 Sobic004G322000 Sobic001G503000--Sobic004G322000 Sobic001G212451 Sobic001G212451 Sobic001G464300--Sobic001G212451 Sobic002G391200 Sobic002G391200 Sobic001G464300--Sobic002G391200 Sobic001G464300--Sobic004G248500 Sobic001G173700 Sobic001G173700 Sobic001G464300--Sobic001G173700 Sobic010G021700 Sobic010G021700 Sobic001G464300--Sobic010G021700 Sobic002G082700 Sobic002G082700 Sobic001G464300--Sobic002G082700 Sobic001G464300--Sobic005G104200 Sobic001G464300--Sobic001G348800 Sobic001G301400 Sobic001G301400 Sobic001G464300--Sobic001G301400 Sobic007G109600--Sobic006G183900 Sobic007G109600--Sobic004G248500 Sobic006G028400 Sobic006G028400 Sobic007G109600--Sobic006G028400 Sobic005G097600 Sobic005G097600 Sobic007G109600--Sobic005G097600 Sobic007G109600--Sobic001G212451 Sobic002G365500 Sobic002G365500 Sobic007G109600--Sobic002G365500 Sobic002G365600 Sobic002G365600 Sobic007G109600--Sobic002G365600 Sobic008G034700 Sobic008G034700 Sobic007G109600--Sobic008G034700 Sobic003G269600 Sobic003G269600 Sobic007G109600--Sobic003G269600 Sobic004G312200--Sobic005G115300 Sobic004G312200--Sobic001G503000 Sobic006G196400 Sobic006G196400 Sobic004G312200--Sobic006G196400 Sobic005G175900 Sobic005G175900 Sobic004G312200--Sobic005G175900 Sobic004G312200--Sobic010G082000 Sobic003G185300 Sobic003G185300 Sobic004G312200--Sobic003G185300 Sobic004G312200--Sobic001G263300 Sobic004G312200--Sobic003G215300 Sobic001G149400 Sobic001G149400 Sobic004G312200--Sobic001G149400 Sobic001G348800--Sobic005G104200 Sobic001G348800--Sobic005G115300 Sobic001G238500 Sobic001G238500 Sobic001G348800--Sobic001G238500 Sobic004G126500 Sobic004G126500 Sobic001G348800--Sobic004G126500 Sobic002G238700 Sobic002G238700 Sobic001G348800--Sobic002G238700 Sobic001G348800--Sobic001G503000 Sobic001G348800--Sobic004G248500 Sobic002G019100 Sobic002G019100 Sobic001G348800--Sobic002G019100 Sobic006G009700 Sobic006G009700 Sobic001G348800--Sobic006G009700 Sobic003G287200 Sobic003G287200 Sobic006G183900--Sobic003G287200 Sobic006G183900--Sobic007G109600 Sobic006G183900--Sobic006G028400 Sobic007G090472 Sobic007G090472 Sobic006G183900--Sobic007G090472 Sobic006G183900--Sobic008G034700 Sobic006G183900--Sobic004G248500 Sobic007G170300 Sobic007G170300 Sobic006G183900--Sobic007G170300 Sobic006G183900--Sobic002G365600 Sobic006G183900--Sobic002G365500 Sobic005G104200--Sobic001G238500 Sobic005G104200--Sobic001G506600 Sobic005G104200--Sobic002G019100 Sobic005G104200--Sobic001G503000 Sobic006G117500 Sobic006G117500 Sobic005G104200--Sobic006G117500 Sobic005G104200--Sobic004G126500 Sobic005G104200--Sobic006G009700 Sobic002G411000 Sobic002G411000 Sobic005G104200--Sobic002G411000 Sobic005G104200--Sobic001G348800 Sobic003G240400 Sobic003G240400 Sobic001G263300--Sobic003G240400 Sobic001G263300--Sobic005G175900 Sobic001G263300--Sobic003G215300 Sobic002G115600 Sobic002G115600 Sobic001G263300--Sobic002G115600 Sobic007G090600 Sobic007G090600 Sobic001G263300--Sobic007G090600 Sobic001G263300--Sobic006G196400 Sobic001G263300--Sobic005G097600 Sobic006G031100 Sobic006G031100 Sobic001G263300--Sobic006G031100 Sobic001G263300--Sobic004G322000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.