Gene annotation
Transcriptome id Sobic.005G080600.1
Synonym
Functional annotation RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed
UniProt A0A1B6PQX3
Pfam PF06830
Panther DB PTHR31656 PTHR31656:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19430 : late embryogenesis abundant protein-related / LEA protein-related
RAP-DB (Rice) LOC_Os01g73730.1 : RCLEA5 - Root cap and Late embryogenesis related family protein precursor, expressed
MaizeGDB (Corn) Zm00025a040983 , Zm00025a029575 , Zm00025a039058 , Zm00025a025854 , Zm00025a025852 , Zm00025a025851
Brachypodium KQK11723 , KQK09956
Barley HORVU3Hr1G075070.1 , HORVU3Hr1G113530.1 , HORVU3Hr1G113530.6 , HORVU3Hr1G113530.4 , HORVU3Hr1G113530.5 , HORVU3Hr1G113530.3 , HORVU1Hr1G002950.3 , HORVU1Hr1G002950.2 , HORVU1Hr1G002950.1
Wheat TraesCSU02G059100 , TraesCS3D02G306100 , TraesCS3B02G340500 , TraesCS3A02G519700 , TraesCS3A02G296600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G206800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like protein kinase, putative, expressed -
2 Sobic.006G196400 U-box, putative, expressed -
3 Sobic.007G220400 receptor-like protein kinase 2 precursor, putative, expressed -
4 Sobic.002G391400 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.009G259800 zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
6 Sobic.004G119800 expansin precursor, putative, expressed -
7 Sobic.002G334000 CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
8 Sobic.002G068000 expressed protein -
9 Sobic.010G241900 Leucine-rich receptor-like protein kinase family protein(PubMedID : 28640841)@serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
10 Sobic.005G226350 - -
11 Sobic.009G032900 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.006G205700 glycosyl hydrolases family 16, putative, expressed -
13 Sobic.010G191700 cytochrome P450, putative, expressed -
14 Sobic.002G111900 receptor-like kinase, putative, expressed -
15 Sobic.002G115600 membrane protein, putative, expressed -
16 Sobic.007G090600 CSLC3 - cellulose synthase-like family C, expressed -
17 Sobic.005G175900 expressed protein -
18 Sobic.002G392100 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.003G441601 - -
20 Sobic.002G003400 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic005G080600 Sobic005G080600 Sobic007G206800 Sobic007G206800 Sobic005G080600--Sobic007G206800 Sobic006G196400 Sobic006G196400 Sobic005G080600--Sobic006G196400 Sobic007G220400 Sobic007G220400 Sobic005G080600--Sobic007G220400 Sobic002G391400 Sobic002G391400 Sobic005G080600--Sobic002G391400 Sobic009G259800 Sobic009G259800 Sobic005G080600--Sobic009G259800 Sobic004G119800 Sobic004G119800 Sobic005G080600--Sobic004G119800 Sobic002G334000 Sobic002G334000 Sobic005G080600--Sobic002G334000 Sobic002G068000 Sobic002G068000 Sobic005G080600--Sobic002G068000 Sobic010G241900 Sobic010G241900 Sobic005G080600--Sobic010G241900 Sobic007G206800--Sobic002G391400 Sobic007G206800--Sobic002G334000 Sobic007G206800--Sobic007G220400 Sobic007G206800--Sobic010G241900 Sobic010G191700 Sobic010G191700 Sobic007G206800--Sobic010G191700 Sobic006G205700 Sobic006G205700 Sobic007G206800--Sobic006G205700 Sobic007G206800--Sobic005G080600 Sobic002G111900 Sobic002G111900 Sobic007G206800--Sobic002G111900 Sobic002G392100 Sobic002G392100 Sobic007G206800--Sobic002G392100 Sobic006G031100 Sobic006G031100 Sobic006G196400--Sobic006G031100 Sobic007G090600 Sobic007G090600 Sobic006G196400--Sobic007G090600 Sobic006G196400--Sobic005G080600 Sobic003G240400 Sobic003G240400 Sobic006G196400--Sobic003G240400 Sobic003G215300 Sobic003G215300 Sobic006G196400--Sobic003G215300 Sobic002G115600 Sobic002G115600 Sobic006G196400--Sobic002G115600 Sobic005G175900 Sobic005G175900 Sobic006G196400--Sobic005G175900 Sobic010G082000 Sobic010G082000 Sobic006G196400--Sobic010G082000 Sobic006G196400--Sobic006G205700 Sobic007G220400--Sobic010G241900 Sobic007G220400--Sobic010G191700 Sobic007G220400--Sobic007G206800 Sobic007G220400--Sobic002G111900 Sobic005G226350 Sobic005G226350 Sobic007G220400--Sobic005G226350 Sobic007G220400--Sobic002G391400 Sobic005G134200 Sobic005G134200 Sobic007G220400--Sobic005G134200 Sobic010G128300 Sobic010G128300 Sobic007G220400--Sobic010G128300 Sobic007G220400--Sobic002G334000 Sobic002G391400--Sobic007G206800 Sobic002G391400--Sobic010G241900 Sobic002G391400--Sobic006G205700 Sobic002G391400--Sobic010G191700 Sobic002G391400--Sobic007G220400 Sobic002G391400--Sobic002G334000 Sobic002G391400--Sobic002G392100 Sobic002G391400--Sobic002G111900 Sobic010G191600 Sobic010G191600 Sobic002G391400--Sobic010G191600 Sobic009G259800--Sobic005G080600 Sobic003G185300 Sobic003G185300 Sobic009G259800--Sobic003G185300 Sobic009G259800--Sobic007G206800 Sobic006G019700 Sobic006G019700 Sobic009G259800--Sobic006G019700 Sobic007G100700 Sobic007G100700 Sobic009G259800--Sobic007G100700 Sobic009G259800--Sobic006G196400 Sobic009G259800--Sobic002G068000 Sobic010G234500 Sobic010G234500 Sobic009G259800--Sobic010G234500 Sobic003G426500 Sobic003G426500 Sobic009G259800--Sobic003G426500 Sobic004G119800--Sobic005G080600 Sobic004G306900 Sobic004G306900 Sobic004G119800--Sobic004G306900 Sobic004G119800--Sobic006G196400 Sobic004G119800--Sobic009G259800 Sobic001G218400 Sobic001G218400 Sobic004G119800--Sobic001G218400 Sobic006G106900 Sobic006G106900 Sobic004G119800--Sobic006G106900 Sobic004G119800--Sobic007G206800 Sobic004G119800--Sobic006G205700 Sobic006G092700 Sobic006G092700 Sobic004G119800--Sobic006G092700 Sobic002G334000--Sobic007G206800 Sobic003G046700 Sobic003G046700 Sobic002G334000--Sobic003G046700 Sobic002G334000--Sobic010G191700 Sobic002G334000--Sobic002G391400 Sobic002G334000--Sobic010G241900 Sobic002G334000--Sobic007G220400 Sobic001G238100 Sobic001G238100 Sobic002G334000--Sobic001G238100 Sobic002G334000--Sobic005G226350 Sobic002G334000--Sobic010G128300 Sobic009G032900 Sobic009G032900 Sobic002G068000--Sobic009G032900 Sobic003G349400 Sobic003G349400 Sobic002G068000--Sobic003G349400 Sobic010G158400 Sobic010G158400 Sobic002G068000--Sobic010G158400 Sobic002G068000--Sobic010G234500 Sobic002G068000--Sobic005G080600 Sobic002G068000--Sobic009G259800 Sobic002G068000--Sobic003G426500 Sobic005G216700 Sobic005G216700 Sobic002G068000--Sobic005G216700 Sobic010G066800 Sobic010G066800 Sobic002G068000--Sobic010G066800 Sobic010G241900--Sobic010G191700 Sobic010G241900--Sobic002G391400 Sobic010G241900--Sobic007G220400 Sobic002G391300 Sobic002G391300 Sobic010G241900--Sobic002G391300 Sobic010G241900--Sobic010G128300 Sobic010G241900--Sobic007G206800 Sobic010G241900--Sobic002G111900 Sobic010G241900--Sobic005G134200 Sobic010G241900--Sobic005G226350
Octagon: transcription factors


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