Gene annotation
Transcriptome id Sobic.002G334000.1
Synonym Sb02g035990, CSLD5, SOS6, ATCSLD5
Functional annotation CSLF3 - cellulose synthase-like family F
beta1,3
1,4 glucan synthase, expressed
UniProt A0A1B6QEW4
Pfam PF03552
Panther DB PTHR13301 PTHR13301:SF71
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016760; cellulose synthase (UDP-forming) activity GO:0016020membrane


Orthologs (automatic annotation)
TAIR AT1G02730 : cellulose synthase-like D5
RAP-DB (Rice) LOC_Os07g36750.1 : CSLF3 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed
MaizeGDB (Corn) Zm00025a014885 , Zm00025a048344
Brachypodium KQK15830
Barley -
Wheat TraesCS2A02G210400 , TraesCS2D02G575900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G206800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like protein kinase, putative, expressed -
2 Sobic.003G046700 expressed protein -
3 Sobic.010G191700 cytochrome P450, putative, expressed -
4 Sobic.002G391400 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.010G241900 Leucine-rich receptor-like protein kinase family protein(PubMedID : 28640841)@serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
6 Sobic.007G220400 receptor-like protein kinase 2 precursor, putative, expressed -
7 Sobic.001G238100 expansin precursor, putative, expressed -
8 Sobic.005G226350 - -
9 Sobic.010G128300 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.010G269000 bZIP transcription factor domain containing protein, expressed -
11 Sobic.002G392100 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.001G499900 expansin precursor, putative, expressed -
13 Sobic.005G120900 expressed protein -
14 Sobic.009G032900 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.004G008600 receptor protein kinase CLAVATA1 precursor, putative, expressed -
16 Sobic.005G080600 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
17 Sobic.002G111900 receptor-like kinase, putative, expressed -
18 Sobic.005G134200 "domain confirmed by Pfam database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsGH3.13 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
19 Sobic.002G392000 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.006G047200 helix-loop-helix DNA-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic002G334000 Sobic002G334000 Sobic007G206800 Sobic007G206800 Sobic002G334000--Sobic007G206800 Sobic003G046700 Sobic003G046700 Sobic002G334000--Sobic003G046700 Sobic010G191700 Sobic010G191700 Sobic002G334000--Sobic010G191700 Sobic002G391400 Sobic002G391400 Sobic002G334000--Sobic002G391400 Sobic010G241900 Sobic010G241900 Sobic002G334000--Sobic010G241900 Sobic007G220400 Sobic007G220400 Sobic002G334000--Sobic007G220400 Sobic001G238100 Sobic001G238100 Sobic002G334000--Sobic001G238100 Sobic005G226350 Sobic005G226350 Sobic002G334000--Sobic005G226350 Sobic010G128300 Sobic010G128300 Sobic002G334000--Sobic010G128300 Sobic007G206800--Sobic002G391400 Sobic007G206800--Sobic002G334000 Sobic007G206800--Sobic007G220400 Sobic007G206800--Sobic010G241900 Sobic007G206800--Sobic010G191700 Sobic006G205700 Sobic006G205700 Sobic007G206800--Sobic006G205700 Sobic005G080600 Sobic005G080600 Sobic007G206800--Sobic005G080600 Sobic002G111900 Sobic002G111900 Sobic007G206800--Sobic002G111900 Sobic002G392100 Sobic002G392100 Sobic007G206800--Sobic002G392100 Sobic003G046700--Sobic002G334000 Sobic010G269000 Sobic010G269000 Sobic003G046700--Sobic010G269000 Sobic004G008600 Sobic004G008600 Sobic003G046700--Sobic004G008600 Sobic005G216500 Sobic005G216500 Sobic003G046700--Sobic005G216500 Sobic003G046700--Sobic005G226350 Sobic003G046700--Sobic007G220400 Sobic003G046700--Sobic010G191700 Sobic009G018300 Sobic009G018300 Sobic003G046700--Sobic009G018300 Sobic003G046700--Sobic010G241900 Sobic010G191700--Sobic010G241900 Sobic010G191700--Sobic002G111900 Sobic010G191700--Sobic007G220400 Sobic002G391300 Sobic002G391300 Sobic010G191700--Sobic002G391300 Sobic010G191700--Sobic010G128300 Sobic010G191700--Sobic002G391400 Sobic003G441601 Sobic003G441601 Sobic010G191700--Sobic003G441601 Sobic010G191700--Sobic007G206800 Sobic005G134200 Sobic005G134200 Sobic010G191700--Sobic005G134200 Sobic002G391400--Sobic007G206800 Sobic002G391400--Sobic010G241900 Sobic002G391400--Sobic006G205700 Sobic002G391400--Sobic010G191700 Sobic002G391400--Sobic007G220400 Sobic002G391400--Sobic002G334000 Sobic002G391400--Sobic002G392100 Sobic002G391400--Sobic002G111900 Sobic010G191600 Sobic010G191600 Sobic002G391400--Sobic010G191600 Sobic010G241900--Sobic010G191700 Sobic010G241900--Sobic002G391400 Sobic010G241900--Sobic007G220400 Sobic010G241900--Sobic002G391300 Sobic010G241900--Sobic010G128300 Sobic010G241900--Sobic007G206800 Sobic010G241900--Sobic002G111900 Sobic010G241900--Sobic005G134200 Sobic010G241900--Sobic005G226350 Sobic007G220400--Sobic010G241900 Sobic007G220400--Sobic010G191700 Sobic007G220400--Sobic007G206800 Sobic007G220400--Sobic002G111900 Sobic007G220400--Sobic005G226350 Sobic007G220400--Sobic002G391400 Sobic007G220400--Sobic005G134200 Sobic007G220400--Sobic010G128300 Sobic007G220400--Sobic002G334000 Sobic001G238100--Sobic002G334000 Sobic001G238100--Sobic003G046700 Sobic006G135500 Sobic006G135500 Sobic001G238100--Sobic006G135500 Sobic001G238100--Sobic007G206800 Sobic001G499900 Sobic001G499900 Sobic001G238100--Sobic001G499900 Sobic009G032900 Sobic009G032900 Sobic001G238100--Sobic009G032900 Sobic001G506100 Sobic001G506100 Sobic001G238100--Sobic001G506100 Sobic001G238100--Sobic007G220400 Sobic001G238100--Sobic002G392100 Sobic005G226350--Sobic007G220400 Sobic005G226350--Sobic010G128300 Sobic005G226350--Sobic010G241900 Sobic005G226350--Sobic010G269000 Sobic005G226350--Sobic010G191700 Sobic005G226350--Sobic005G134200 Sobic005G226350--Sobic002G111900 Sobic005G226400 Sobic005G226400 Sobic005G226350--Sobic005G226400 Sobic005G226350--Sobic004G008600 Sobic002G392000 Sobic002G392000 Sobic010G128300--Sobic002G392000 Sobic010G128300--Sobic010G241900 Sobic010G128300--Sobic010G191700 Sobic010G128300--Sobic002G391300 Sobic010G128300--Sobic005G226400 Sobic010G128300--Sobic005G226350 Sobic010G128300--Sobic005G134200 Sobic009G136800 Sobic009G136800 Sobic010G128300--Sobic009G136800 Sobic010G128300--Sobic007G220400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.