Gene annotation
Transcriptome id Sobic.002G068000.1
Synonym Sb02g005700
Functional annotation expressed protein
UniProt C5XCI9
Pfam PF07995
Panther DB PTHR19328 PTHR19328:SF35
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016901; oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor GO:0005975carbohydrate metabolic process


Orthologs (automatic annotation)
TAIR AT1G74790 : catalytics
RAP-DB (Rice) LOC_Os07g09520.1 : expressed protein
MaizeGDB (Corn) Zm00025a045300 , Zm00025a043842
Brachypodium KQK20471
Barley HORVU7Hr1G042240.5 , HORVU7Hr1G042240.4 , HORVU7Hr1G042240.1 , HORVU7Hr1G042240.3
Wheat TraesCS7B02G114600 , TraesCS3B02G041600 , TraesCS3B02G041600 , TraesCS7B02G114600 , TraesCS7A02G207700 , TraesCS7D02G210200 , TraesCS3D02G038200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G032900 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.003G349400 expressed protein -
3 Sobic.010G158400 zinc finger, C3HC4 type domain containing protein, expressed -
4 Sobic.010G234500 O-methyltransferase, putative, expressed -
5 Sobic.005G080600 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
6 Sobic.009G259800 zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
7 Sobic.003G426500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.005G216700 plant protein of unknown function domain containing protein, expressed -
9 Sobic.010G066800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
10 Sobic.007G206800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like protein kinase, putative, expressed -
11 Sobic.003G185300 dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
12 Sobic.003G064800 dirigent, putative, expressed -
13 Sobic.007G100700 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
14 Sobic.003G182200 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed -
15 Sobic.004G351200 -(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
16 Sobic.006G150100 Down-regulated by silicon application(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
17 Sobic.008G034900 PAN domain-containing protein At5g03700 precursor, putative, expressed -
18 Sobic.005G127400 expressed protein -
19 Sobic.001G182200 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.002G392100 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic002G068000 Sobic002G068000 Sobic009G032900 Sobic009G032900 Sobic002G068000--Sobic009G032900 Sobic003G349400 Sobic003G349400 Sobic002G068000--Sobic003G349400 Sobic010G158400 Sobic010G158400 Sobic002G068000--Sobic010G158400 Sobic010G234500 Sobic010G234500 Sobic002G068000--Sobic010G234500 Sobic005G080600 Sobic005G080600 Sobic002G068000--Sobic005G080600 Sobic009G259800 Sobic009G259800 Sobic002G068000--Sobic009G259800 Sobic003G426500 Sobic003G426500 Sobic002G068000--Sobic003G426500 Sobic005G216700 Sobic005G216700 Sobic002G068000--Sobic005G216700 Sobic010G066800 Sobic010G066800 Sobic002G068000--Sobic010G066800 Sobic009G032900--Sobic002G068000 Sobic004G351200 Sobic004G351200 Sobic009G032900--Sobic004G351200 Sobic009G032900--Sobic005G216700 Sobic009G032900--Sobic010G158400 Sobic002G334000 Sobic002G334000 Sobic009G032900--Sobic002G334000 Sobic010G139100 Sobic010G139100 Sobic009G032900--Sobic010G139100 Sobic007G206800 Sobic007G206800 Sobic009G032900--Sobic007G206800 Sobic003G046700 Sobic003G046700 Sobic009G032900--Sobic003G046700 Sobic003G269900 Sobic003G269900 Sobic009G032900--Sobic003G269900 Sobic005G127400 Sobic005G127400 Sobic003G349400--Sobic005G127400 Sobic003G349400--Sobic010G234500 Sobic003G349400--Sobic002G068000 Sobic006G150100 Sobic006G150100 Sobic003G349400--Sobic006G150100 Sobic002G255000 Sobic002G255000 Sobic003G349400--Sobic002G255000 Sobic003G064800 Sobic003G064800 Sobic003G349400--Sobic003G064800 Sobic003G349400--Sobic010G066800 Sobic004G110700 Sobic004G110700 Sobic003G349400--Sobic004G110700 Sobic007G100700 Sobic007G100700 Sobic003G349400--Sobic007G100700 Sobic010G158400--Sobic002G068000 Sobic010G158400--Sobic009G032900 Sobic010G158400--Sobic003G426500 Sobic010G158400--Sobic003G349400 Sobic010G158400--Sobic004G351200 Sobic003G185300 Sobic003G185300 Sobic010G158400--Sobic003G185300 Sobic010G158400--Sobic005G216700 Sobic010G158400--Sobic009G259800 Sobic010G158400--Sobic006G150100 Sobic010G234500--Sobic003G349400 Sobic010G234500--Sobic003G064800 Sobic010G234500--Sobic005G127400 Sobic010G234500--Sobic002G255000 Sobic001G238200 Sobic001G238200 Sobic010G234500--Sobic001G238200 Sobic009G186500 Sobic009G186500 Sobic010G234500--Sobic009G186500 Sobic010G234500--Sobic002G068000 Sobic004G306900 Sobic004G306900 Sobic010G234500--Sobic004G306900 Sobic006G019700 Sobic006G019700 Sobic010G234500--Sobic006G019700 Sobic005G080600--Sobic007G206800 Sobic006G196400 Sobic006G196400 Sobic005G080600--Sobic006G196400 Sobic007G220400 Sobic007G220400 Sobic005G080600--Sobic007G220400 Sobic002G391400 Sobic002G391400 Sobic005G080600--Sobic002G391400 Sobic005G080600--Sobic009G259800 Sobic004G119800 Sobic004G119800 Sobic005G080600--Sobic004G119800 Sobic005G080600--Sobic002G334000 Sobic005G080600--Sobic002G068000 Sobic010G241900 Sobic010G241900 Sobic005G080600--Sobic010G241900 Sobic009G259800--Sobic005G080600 Sobic009G259800--Sobic003G185300 Sobic009G259800--Sobic007G206800 Sobic009G259800--Sobic006G019700 Sobic009G259800--Sobic007G100700 Sobic009G259800--Sobic006G196400 Sobic009G259800--Sobic002G068000 Sobic009G259800--Sobic010G234500 Sobic009G259800--Sobic003G426500 Sobic003G426500--Sobic007G100700 Sobic003G182200 Sobic003G182200 Sobic003G426500--Sobic003G182200 Sobic008G011700 Sobic008G011700 Sobic003G426500--Sobic008G011700 Sobic003G426500--Sobic010G066800 Sobic001G067100 Sobic001G067100 Sobic003G426500--Sobic001G067100 Sobic003G426500--Sobic002G068000 Sobic003G426500--Sobic009G259800 Sobic003G426500--Sobic010G158400 Sobic003G426500--Sobic003G349400 Sobic005G216700--Sobic004G351200 Sobic005G216700--Sobic009G032900 Sobic005G216700--Sobic010G139100 Sobic005G216700--Sobic002G068000 Sobic005G216700--Sobic002G334000 Sobic005G216700--Sobic007G206800 Sobic005G216700--Sobic010G158400 Sobic005G216700--Sobic005G080600 Sobic005G216700--Sobic003G046700 Sobic010G066800--Sobic007G100700 Sobic010G066800--Sobic003G426500 Sobic010G066800--Sobic003G349400 Sobic010G066800--Sobic002G068000 Sobic010G066800--Sobic003G182200 Sobic007G008600 Sobic007G008600 Sobic010G066800--Sobic007G008600 Sobic010G066800--Sobic009G032900 Sobic010G066800--Sobic008G011700 Sobic010G066800--Sobic002G255000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.