Gene annotation
Transcriptome id Sobic.009G259800.1
Synonym Sb09g030900
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5YX35
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF95
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology K10664; E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G28890 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g51780.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036827 , Zm00025a044798
Brachypodium KQK04546
Barley HORVU1Hr1G095220.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G080600 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
2 Sobic.003G185300 dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type
3 Sobic.007G206800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like protein kinase, putative, expressed -
4 Sobic.006G019700 transferase family protein, putative, expressed -
5 Sobic.007G100700 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
6 Sobic.006G196400 U-box, putative, expressed -
7 Sobic.002G068000 expressed protein -
8 Sobic.010G234500 O-methyltransferase, putative, expressed -
9 Sobic.003G426500 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.003G182200 1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed -
11 Sobic.007G220400 receptor-like protein kinase 2 precursor, putative, expressed -
12 Sobic.004G119800 expansin precursor, putative, expressed -
13 Sobic.009G032900 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.002G391400 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.005G175900 expressed protein -
16 Sobic.010G158400 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.006G135300 expressed protein -
18 Sobic.010G241900 Leucine-rich receptor-like protein kinase family protein(PubMedID : 28640841)@serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed -
19 Sobic.001G414800 dirigent, putative, expressed -
20 Sobic.007G090600 CSLC3 - cellulose synthase-like family C, expressed -


Gene co-expression network
sample Sobic009G259800 Sobic009G259800 Sobic005G080600 Sobic005G080600 Sobic009G259800--Sobic005G080600 Sobic003G185300 Sobic003G185300 Sobic009G259800--Sobic003G185300 Sobic007G206800 Sobic007G206800 Sobic009G259800--Sobic007G206800 Sobic006G019700 Sobic006G019700 Sobic009G259800--Sobic006G019700 Sobic007G100700 Sobic007G100700 Sobic009G259800--Sobic007G100700 Sobic006G196400 Sobic006G196400 Sobic009G259800--Sobic006G196400 Sobic002G068000 Sobic002G068000 Sobic009G259800--Sobic002G068000 Sobic010G234500 Sobic010G234500 Sobic009G259800--Sobic010G234500 Sobic003G426500 Sobic003G426500 Sobic009G259800--Sobic003G426500 Sobic005G080600--Sobic007G206800 Sobic005G080600--Sobic006G196400 Sobic007G220400 Sobic007G220400 Sobic005G080600--Sobic007G220400 Sobic002G391400 Sobic002G391400 Sobic005G080600--Sobic002G391400 Sobic005G080600--Sobic009G259800 Sobic004G119800 Sobic004G119800 Sobic005G080600--Sobic004G119800 Sobic002G334000 Sobic002G334000 Sobic005G080600--Sobic002G334000 Sobic005G080600--Sobic002G068000 Sobic010G241900 Sobic010G241900 Sobic005G080600--Sobic010G241900 Sobic003G185300--Sobic009G259800 Sobic003G185300--Sobic002G068000 Sobic009G032900 Sobic009G032900 Sobic003G185300--Sobic009G032900 Sobic010G158400 Sobic010G158400 Sobic003G185300--Sobic010G158400 Sobic003G185300--Sobic005G080600 Sobic003G185300--Sobic003G426500 Sobic005G216500 Sobic005G216500 Sobic003G185300--Sobic005G216500 Sobic003G269900 Sobic003G269900 Sobic003G185300--Sobic003G269900 Sobic005G115300 Sobic005G115300 Sobic003G185300--Sobic005G115300 Sobic007G206800--Sobic002G391400 Sobic007G206800--Sobic002G334000 Sobic007G206800--Sobic007G220400 Sobic007G206800--Sobic010G241900 Sobic010G191700 Sobic010G191700 Sobic007G206800--Sobic010G191700 Sobic006G205700 Sobic006G205700 Sobic007G206800--Sobic006G205700 Sobic007G206800--Sobic005G080600 Sobic002G111900 Sobic002G111900 Sobic007G206800--Sobic002G111900 Sobic002G392100 Sobic002G392100 Sobic007G206800--Sobic002G392100 Sobic004G306900 Sobic004G306900 Sobic006G019700--Sobic004G306900 Sobic003G182200 Sobic003G182200 Sobic006G019700--Sobic003G182200 Sobic006G028500 Sobic006G028500 Sobic006G019700--Sobic006G028500 Sobic004G322100 Sobic004G322100 Sobic006G019700--Sobic004G322100 Sobic010G082000 Sobic010G082000 Sobic006G019700--Sobic010G082000 Sobic006G092700 Sobic006G092700 Sobic006G019700--Sobic006G092700 Sobic010G152400 Sobic010G152400 Sobic006G019700--Sobic010G152400 Sobic006G135300 Sobic006G135300 Sobic006G019700--Sobic006G135300 Sobic003G000100 Sobic003G000100 Sobic006G019700--Sobic003G000100 Sobic007G100700--Sobic003G182200 Sobic007G100700--Sobic003G426500 Sobic007G008600 Sobic007G008600 Sobic007G100700--Sobic007G008600 Sobic002G255000 Sobic002G255000 Sobic007G100700--Sobic002G255000 Sobic008G011700 Sobic008G011700 Sobic007G100700--Sobic008G011700 Sobic010G066800 Sobic010G066800 Sobic007G100700--Sobic010G066800 Sobic006G106900 Sobic006G106900 Sobic007G100700--Sobic006G106900 Sobic003G064800 Sobic003G064800 Sobic007G100700--Sobic003G064800 Sobic007G100700--Sobic004G306900 Sobic006G031100 Sobic006G031100 Sobic006G196400--Sobic006G031100 Sobic007G090600 Sobic007G090600 Sobic006G196400--Sobic007G090600 Sobic006G196400--Sobic005G080600 Sobic003G240400 Sobic003G240400 Sobic006G196400--Sobic003G240400 Sobic003G215300 Sobic003G215300 Sobic006G196400--Sobic003G215300 Sobic002G115600 Sobic002G115600 Sobic006G196400--Sobic002G115600 Sobic005G175900 Sobic005G175900 Sobic006G196400--Sobic005G175900 Sobic006G196400--Sobic010G082000 Sobic006G196400--Sobic006G205700 Sobic002G068000--Sobic009G032900 Sobic003G349400 Sobic003G349400 Sobic002G068000--Sobic003G349400 Sobic002G068000--Sobic010G158400 Sobic002G068000--Sobic010G234500 Sobic002G068000--Sobic005G080600 Sobic002G068000--Sobic009G259800 Sobic002G068000--Sobic003G426500 Sobic005G216700 Sobic005G216700 Sobic002G068000--Sobic005G216700 Sobic002G068000--Sobic010G066800 Sobic010G234500--Sobic003G349400 Sobic010G234500--Sobic003G064800 Sobic005G127400 Sobic005G127400 Sobic010G234500--Sobic005G127400 Sobic010G234500--Sobic002G255000 Sobic001G238200 Sobic001G238200 Sobic010G234500--Sobic001G238200 Sobic009G186500 Sobic009G186500 Sobic010G234500--Sobic009G186500 Sobic010G234500--Sobic002G068000 Sobic010G234500--Sobic004G306900 Sobic010G234500--Sobic006G019700 Sobic003G426500--Sobic007G100700 Sobic003G426500--Sobic003G182200 Sobic003G426500--Sobic008G011700 Sobic003G426500--Sobic010G066800 Sobic001G067100 Sobic001G067100 Sobic003G426500--Sobic001G067100 Sobic003G426500--Sobic002G068000 Sobic003G426500--Sobic009G259800 Sobic003G426500--Sobic010G158400 Sobic003G426500--Sobic003G349400
Octagon: transcription factors


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