Gene annotation
Transcriptome id Sobic.005G216700.2,Sobic.005G216700.4,Sobic.005G216700.3
Synonym Sb05g026780
Functional annotation plant protein of unknown function domain containing protein, expressed
UniProt A0A1Z5RJW2 , A0A1Z5RK28
Pfam PF03140
Panther DB PTHR31549 PTHR31549:SF32
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G50160 : Plant protein of unknown function (DUF247)
RAP-DB (Rice) LOC_Os08g02820.1 : plant protein of unknown function domain containing protein, expressed
MaizeGDB (Corn) Zm00025a033679
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G351200 -(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
2 Sobic.009G032900 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.010G139100 serine/threonine-protein kinase, putative, expressed -
4 Sobic.002G068000 expressed protein -
5 Sobic.002G334000 CSLF3 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
6 Sobic.007G206800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like protein kinase, putative, expressed -
7 Sobic.010G158400 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.005G080600 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
9 Sobic.003G046700 expressed protein -
10 Sobic.001G238100 expansin precursor, putative, expressed -
11 Sobic.003G269900 OsSub12 - Putative Subtilisin homologue, expressed -
12 Sobic.002G392100 peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.001G216500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@nodulin, putative, expressed K07192: flotillin
14 Sobic.002G118900 auxin-induced protein 5NG4, putative, expressed -
15 Sobic.009G259800 zinc finger, C3HC4 type domain containing protein, expressed K10664: E3 ubiquitin-protein ligase ATL6/9/15/31/42/55
16 Sobic.002G391400 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.003G349400 expressed protein -
18 Sobic.006G150100 Down-regulated by silicon application(PubMedID : 24879770)@Up-regulated by osmotic stress.(PubMedID : 24879770)@aquaporin protein, putative, expressed K09872: aquaporin PIP
19 Sobic.007G220400 receptor-like protein kinase 2 precursor, putative, expressed -
20 Sobic.003G185300 dynein light chain type 1 domain containing protein, expressed K10418: dynein light chain LC8-type


Gene co-expression network
sample Sobic005G216700 Sobic005G216700 Sobic004G351200 Sobic004G351200 Sobic005G216700--Sobic004G351200 Sobic009G032900 Sobic009G032900 Sobic005G216700--Sobic009G032900 Sobic010G139100 Sobic010G139100 Sobic005G216700--Sobic010G139100 Sobic002G068000 Sobic002G068000 Sobic005G216700--Sobic002G068000 Sobic002G334000 Sobic002G334000 Sobic005G216700--Sobic002G334000 Sobic007G206800 Sobic007G206800 Sobic005G216700--Sobic007G206800 Sobic010G158400 Sobic010G158400 Sobic005G216700--Sobic010G158400 Sobic005G080600 Sobic005G080600 Sobic005G216700--Sobic005G080600 Sobic003G046700 Sobic003G046700 Sobic005G216700--Sobic003G046700 Sobic004G351200--Sobic005G216700 Sobic004G351200--Sobic009G032900 Sobic004G351200--Sobic010G139100 Sobic004G351200--Sobic002G334000 Sobic004G351200--Sobic002G068000 Sobic004G351200--Sobic010G158400 Sobic004G351200--Sobic007G206800 Sobic002G392100 Sobic002G392100 Sobic004G351200--Sobic002G392100 Sobic006G150100 Sobic006G150100 Sobic004G351200--Sobic006G150100 Sobic009G032900--Sobic002G068000 Sobic009G032900--Sobic004G351200 Sobic009G032900--Sobic005G216700 Sobic009G032900--Sobic010G158400 Sobic009G032900--Sobic002G334000 Sobic009G032900--Sobic010G139100 Sobic009G032900--Sobic007G206800 Sobic009G032900--Sobic003G046700 Sobic003G269900 Sobic003G269900 Sobic009G032900--Sobic003G269900 Sobic010G139100--Sobic009G032900 Sobic010G139100--Sobic004G351200 Sobic010G139100--Sobic003G269900 Sobic010G139100--Sobic005G216700 Sobic006G135500 Sobic006G135500 Sobic010G139100--Sobic006G135500 Sobic004G323000 Sobic004G323000 Sobic010G139100--Sobic004G323000 Sobic010G115000 Sobic010G115000 Sobic010G139100--Sobic010G115000 Sobic010G174100 Sobic010G174100 Sobic010G139100--Sobic010G174100 Sobic010G139100--Sobic010G158400 Sobic002G068000--Sobic009G032900 Sobic003G349400 Sobic003G349400 Sobic002G068000--Sobic003G349400 Sobic002G068000--Sobic010G158400 Sobic010G234500 Sobic010G234500 Sobic002G068000--Sobic010G234500 Sobic002G068000--Sobic005G080600 Sobic009G259800 Sobic009G259800 Sobic002G068000--Sobic009G259800 Sobic003G426500 Sobic003G426500 Sobic002G068000--Sobic003G426500 Sobic002G068000--Sobic005G216700 Sobic010G066800 Sobic010G066800 Sobic002G068000--Sobic010G066800 Sobic002G334000--Sobic007G206800 Sobic002G334000--Sobic003G046700 Sobic010G191700 Sobic010G191700 Sobic002G334000--Sobic010G191700 Sobic002G391400 Sobic002G391400 Sobic002G334000--Sobic002G391400 Sobic010G241900 Sobic010G241900 Sobic002G334000--Sobic010G241900 Sobic007G220400 Sobic007G220400 Sobic002G334000--Sobic007G220400 Sobic001G238100 Sobic001G238100 Sobic002G334000--Sobic001G238100 Sobic005G226350 Sobic005G226350 Sobic002G334000--Sobic005G226350 Sobic010G128300 Sobic010G128300 Sobic002G334000--Sobic010G128300 Sobic007G206800--Sobic002G391400 Sobic007G206800--Sobic002G334000 Sobic007G206800--Sobic007G220400 Sobic007G206800--Sobic010G241900 Sobic007G206800--Sobic010G191700 Sobic006G205700 Sobic006G205700 Sobic007G206800--Sobic006G205700 Sobic007G206800--Sobic005G080600 Sobic002G111900 Sobic002G111900 Sobic007G206800--Sobic002G111900 Sobic007G206800--Sobic002G392100 Sobic010G158400--Sobic002G068000 Sobic010G158400--Sobic009G032900 Sobic010G158400--Sobic003G426500 Sobic010G158400--Sobic003G349400 Sobic010G158400--Sobic004G351200 Sobic003G185300 Sobic003G185300 Sobic010G158400--Sobic003G185300 Sobic010G158400--Sobic005G216700 Sobic010G158400--Sobic009G259800 Sobic010G158400--Sobic006G150100 Sobic005G080600--Sobic007G206800 Sobic006G196400 Sobic006G196400 Sobic005G080600--Sobic006G196400 Sobic005G080600--Sobic007G220400 Sobic005G080600--Sobic002G391400 Sobic005G080600--Sobic009G259800 Sobic004G119800 Sobic004G119800 Sobic005G080600--Sobic004G119800 Sobic005G080600--Sobic002G334000 Sobic005G080600--Sobic002G068000 Sobic005G080600--Sobic010G241900 Sobic003G046700--Sobic002G334000 Sobic010G269000 Sobic010G269000 Sobic003G046700--Sobic010G269000 Sobic004G008600 Sobic004G008600 Sobic003G046700--Sobic004G008600 Sobic005G216500 Sobic005G216500 Sobic003G046700--Sobic005G216500 Sobic003G046700--Sobic005G226350 Sobic003G046700--Sobic007G220400 Sobic003G046700--Sobic010G191700 Sobic009G018300 Sobic009G018300 Sobic003G046700--Sobic009G018300 Sobic003G046700--Sobic010G241900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.