Gene annotation
Transcriptome id Sobic.006G089000.1
Synonym Sb06g017460
Functional annotation helix-loop-helix DNA-binding protein, putative, expressed
UniProt C5Y8U6
Pfam PF00010
Panther DB PTHR11514 PTHR11514:SF48
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37850 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g46860.1 : helix-loop-helix DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a007507 , Zm00025a007959 , Zm00025a011279 , Zm00025a056111
Brachypodium KQJ85669 , KQJ85668 , KQK13832 , KQK13833 , KQK13836
Barley HORVU4Hr1G078910.2 , HORVU4Hr1G003210.2 , HORVU4Hr1G003210.3 , HORVU4Hr1G003210.1 , HORVU4Hr1G078880.1 , HORVU4Hr1G078880.2 , HORVU5Hr1G002090.8 , HORVU5Hr1G002090.9 , HORVU5Hr1G002090.2 , HORVU5Hr1G002090.3 , HORVU5Hr1G002090.1 , HORVU5Hr1G002090.6 , HORVU5Hr1G002090.7 , HORVU5Hr1G002090.4 , HORVU5Hr1G002090.5 , HORVU0Hr1G014300.8 , HORVU0Hr1G014300.1 , HORVU0Hr1G014300.2 , HORVU0Hr1G014300.3 , HORVU0Hr1G014300.4 , HORVU0Hr1G014300.5 , HORVU0Hr1G014300.6 , HORVU0Hr1G014300.7 , HORVU5Hr1G002090.10 , HORVU5Hr1G002090.11 , HORVU5Hr1G002090.12 , HORVU4Hr1G078910.3 , HORVU4Hr1G003340.1 , HORVU4Hr1G003340.2 , HORVU4Hr1G003340.3 , HORVU4Hr1G003340.4 , HORVU4Hr1G003340.5 , HORVU4Hr1G003340.6 , HORVU4Hr1G003340.7 , HORVU4Hr1G003340.8 , HORVU4Hr1G078910.1 , HORVU4Hr1G078910.4
Wheat TraesCS4B02G020900 , TraesCS4A02G292700 , TraesCS5B02G518500 , TraesCS4B02G308100 , TraesCS5D02G517900 , TraesCS5B02G013000 , TraesCS5B02G013000 , TraesCS4D02G306300 , TraesCS4B02G308200 , TraesCS5B02G518400 , TraesCS4D02G018800 , TraesCS4D02G018800 , TraesCS4B02G021500 , TraesCS4B02G308300 , TraesCS4D02G306400 , TraesCS3D02G014900 , TraesCS3B02G029800 , TraesCS5A02G014800 , TraesCS5A02G014800 , TraesCS4A02G292800 , TraesCS4D02G019200 , TraesCS5D02G020600 , TraesCS3A02G019000 , TraesCS4B02G020700 , TraesCS4A02G408800 , TraesCS4D02G019100 , TraesCS4D02G018700 , TraesCS4B02G021100 , TraesCS4B02G021200 , TraesCS4B02G021200 , TraesCS4A02G354100 , TraesCSU02G075200 , TraesCSU02G075200 , TraesCSU02G075200 , TraesCS5D02G020600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G158800 patatin, putative, expressed -
2 Sobic.001G502000 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
3 Sobic.002G183700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@L-ascorbate oxidase precursor, putative, expressed -
4 Sobic.001G379400 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.001G261509 - K09872: aquaporin PIP
6 Sobic.004G297900 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.001G229000 xyloglucan galactosyltransferase KATAMARI1, putative, expressed -
8 Sobic.004G322100 hypro1, putative, expressed -
9 Sobic.001G238300 expansin precursor, putative, expressed -
10 Sobic.002G261500 AIR12, putative, expressed -
11 Sobic.003G000100 STIGL1 - Stigma-specific Stig1 family protein precursor, expressed -
12 Sobic.006G003100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1295 domain containing protein, putative, expressed -
13 Sobic.010G147200 aluminum-activated malate transporter, putative, expressed -
14 Sobic.002G385500 ribonuclease T2 family domain containing protein, expressed K01166: ribonuclease T2
15 Sobic.005G160700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
16 Sobic.008G019800 - -
17 Sobic.003G140700 peroxidase precursor, putative, expressed -
18 Sobic.004G029100 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
19 Sobic.007G050200 DNA binding protein, putative, expressed -
20 Sobic.001G430100 - -


Gene co-expression network
sample Sobic006G089000 Sobic006G089000 Sobic007G158800 Sobic007G158800 Sobic006G089000--Sobic007G158800 Sobic001G502000 Sobic001G502000 Sobic006G089000--Sobic001G502000 Sobic002G183700 Sobic002G183700 Sobic006G089000--Sobic002G183700 Sobic001G379400 Sobic001G379400 Sobic006G089000--Sobic001G379400 Sobic001G261509 Sobic001G261509 Sobic006G089000--Sobic001G261509 Sobic004G297900 Sobic004G297900 Sobic006G089000--Sobic004G297900 Sobic001G229000 Sobic001G229000 Sobic006G089000--Sobic001G229000 Sobic004G322100 Sobic004G322100 Sobic006G089000--Sobic004G322100 Sobic001G238300 Sobic001G238300 Sobic006G089000--Sobic001G238300 Sobic007G158800--Sobic001G502000 Sobic007G158800--Sobic001G229000 Sobic007G158800--Sobic002G183700 Sobic007G158800--Sobic006G089000 Sobic005G222500 Sobic005G222500 Sobic007G158800--Sobic005G222500 Sobic004G029100 Sobic004G029100 Sobic007G158800--Sobic004G029100 Sobic003G000100 Sobic003G000100 Sobic007G158800--Sobic003G000100 Sobic006G003100 Sobic006G003100 Sobic007G158800--Sobic006G003100 Sobic007G086300 Sobic007G086300 Sobic007G158800--Sobic007G086300 Sobic001G502000--Sobic007G158800 Sobic001G502000--Sobic005G222500 Sobic001G502000--Sobic006G089000 Sobic001G502000--Sobic002G183700 Sobic001G502000--Sobic001G229000 Sobic001G502000--Sobic001G261509 Sobic001G502000--Sobic004G029100 Sobic003G400900 Sobic003G400900 Sobic001G502000--Sobic003G400900 Sobic008G019800 Sobic008G019800 Sobic001G502000--Sobic008G019800 Sobic002G183700--Sobic007G158800 Sobic002G183700--Sobic004G029100 Sobic002G183700--Sobic001G502000 Sobic003G140700 Sobic003G140700 Sobic002G183700--Sobic003G140700 Sobic002G183700--Sobic006G089000 Sobic006G274933 Sobic006G274933 Sobic002G183700--Sobic006G274933 Sobic006G225500 Sobic006G225500 Sobic002G183700--Sobic006G225500 Sobic002G183700--Sobic004G322100 Sobic003G311800 Sobic003G311800 Sobic002G183700--Sobic003G311800 Sobic001G379400--Sobic006G089000 Sobic010G147200 Sobic010G147200 Sobic001G379400--Sobic010G147200 Sobic005G160700 Sobic005G160700 Sobic001G379400--Sobic005G160700 Sobic006G277700 Sobic006G277700 Sobic001G379400--Sobic006G277700 Sobic006G079300 Sobic006G079300 Sobic001G379400--Sobic006G079300 Sobic001G234900 Sobic001G234900 Sobic001G379400--Sobic001G234900 Sobic003G337600 Sobic003G337600 Sobic001G379400--Sobic003G337600 Sobic006G174300 Sobic006G174300 Sobic001G379400--Sobic006G174300 Sobic001G379400--Sobic006G003100 Sobic001G261509--Sobic001G502000 Sobic001G261509--Sobic005G222500 Sobic001G261509--Sobic007G158800 Sobic001G261509--Sobic006G089000 Sobic001G261509--Sobic002G183700 Sobic001G261509--Sobic004G029100 Sobic006G277500 Sobic006G277500 Sobic001G261509--Sobic006G277500 Sobic007G158600 Sobic007G158600 Sobic001G261509--Sobic007G158600 Sobic008G068300 Sobic008G068300 Sobic001G261509--Sobic008G068300 Sobic004G297900--Sobic003G311800 Sobic008G009400 Sobic008G009400 Sobic004G297900--Sobic008G009400 Sobic006G235200 Sobic006G235200 Sobic004G297900--Sobic006G235200 Sobic004G297900--Sobic001G238300 Sobic004G295100 Sobic004G295100 Sobic004G297900--Sobic004G295100 Sobic001G300500 Sobic001G300500 Sobic004G297900--Sobic001G300500 Sobic009G109000 Sobic009G109000 Sobic004G297900--Sobic009G109000 Sobic002G261500 Sobic002G261500 Sobic004G297900--Sobic002G261500 SobicK026900 SobicK026900 Sobic004G297900--SobicK026900 Sobic001G229000--Sobic007G158800 Sobic006G028500 Sobic006G028500 Sobic001G229000--Sobic006G028500 Sobic001G229000--Sobic004G322100 Sobic001G229000--Sobic001G502000 Sobic001G229000--Sobic007G086300 Sobic004G110700 Sobic004G110700 Sobic001G229000--Sobic004G110700 Sobic010G152400 Sobic010G152400 Sobic001G229000--Sobic010G152400 Sobic004G306900 Sobic004G306900 Sobic001G229000--Sobic004G306900 Sobic001G229000--Sobic008G019800 Sobic004G322100--Sobic003G000100 Sobic004G322100--Sobic010G152400 Sobic004G322100--Sobic003G140700 Sobic004G323300 Sobic004G323300 Sobic004G322100--Sobic004G323300 Sobic004G322100--Sobic004G306900 Sobic006G019700 Sobic006G019700 Sobic004G322100--Sobic006G019700 Sobic004G322100--Sobic004G029100 Sobic004G322100--Sobic006G028500 Sobic004G322100--Sobic004G110700 Sobic006G172601 Sobic006G172601 Sobic001G238300--Sobic006G172601 Sobic001G238300--Sobic002G261500 Sobic001G238300--Sobic004G297900 Sobic002G425000 Sobic002G425000 Sobic001G238300--Sobic002G425000 Sobic007G090469 Sobic007G090469 Sobic001G238300--Sobic007G090469 Sobic001G238300--SobicK026900 Sobic006G260200 Sobic006G260200 Sobic001G238300--Sobic006G260200 Sobic007G050200 Sobic007G050200 Sobic001G238300--Sobic007G050200 Sobic001G238300--Sobic003G140700
Octagon: transcription factors


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