Gene annotation
Transcriptome id Sobic.007G050200.1,Sobic.007G050200.3,Sobic.007G050200.2
Synonym Sb07g004070
Functional annotation DNA binding protein, putative, expressed
UniProt C5YHD2
Pfam PF03479
Panther DB PTHR31100 PTHR31100:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G35270 : Predicted AT-hook DNA-binding family protein
RAP-DB (Rice) LOC_Os08g06320.1 : DNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a055119 , Zm00025a030060 , Zm00025a030516 , Zm00025a032511 , Zm00025a021796
Brachypodium KQJ95304 , PNT66732 , KQJ94681 , KQJ94680
Barley HORVU4Hr1G000870.6 , HORVU4Hr1G000870.5 , HORVU4Hr1G000870.4 , HORVU4Hr1G000870.3 , HORVU4Hr1G000870.2 , HORVU7Hr1G070490.1 , HORVU7Hr1G070490.2 , HORVU7Hr1G070490.4
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G322100 hypro1, putative, expressed -
2 Sobic.004G323300 SCP-like extracellular protein, expressed -
3 Sobic.009G221500 lipid phosphatase protein, putative, expressed -
4 Sobic.003G140700 peroxidase precursor, putative, expressed -
5 Sobic.001G430100 - -
6 Sobic.006G256900 dirigent-like protein pDIR17, putative, expressed -
7 Sobic.001G058300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein At4g06744 precursor, putative, expressed -
8 Sobic.009G199001 - -
9 Sobic.009G219200 expressed protein -
10 Sobic.002G261500 AIR12, putative, expressed -
11 Sobic.001G238300 expansin precursor, putative, expressed -
12 Sobic.002G042200 gibberellin receptor GID1L2, putative, expressed -
13 Sobic.010G148800 WRKY31, expressed -
14 Sobic.001G238000 expansin precursor, putative, expressed -
15 Sobic.006G197100 DNA binding protein, putative, expressed -
16 Sobic.004G348800 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
17 Sobic.003G351600 expressed protein -
18 Sobic.006G227500 - -
19 Sobic.001G264000 dehydrogenase, putative, expressed K00001: E1.1.1.1, alcohol dehydrogenase
20 Sobic.004G209400 carbonyl reductase 3, putative, expressed -


Gene co-expression network
sample Sobic007G050200 Sobic007G050200 Sobic004G322100 Sobic004G322100 Sobic007G050200--Sobic004G322100 Sobic004G323300 Sobic004G323300 Sobic007G050200--Sobic004G323300 Sobic009G221500 Sobic009G221500 Sobic007G050200--Sobic009G221500 Sobic003G140700 Sobic003G140700 Sobic007G050200--Sobic003G140700 Sobic001G430100 Sobic001G430100 Sobic007G050200--Sobic001G430100 Sobic006G256900 Sobic006G256900 Sobic007G050200--Sobic006G256900 Sobic001G058300 Sobic001G058300 Sobic007G050200--Sobic001G058300 Sobic009G199001 Sobic009G199001 Sobic007G050200--Sobic009G199001 Sobic009G219200 Sobic009G219200 Sobic007G050200--Sobic009G219200 Sobic003G000100 Sobic003G000100 Sobic004G322100--Sobic003G000100 Sobic010G152400 Sobic010G152400 Sobic004G322100--Sobic010G152400 Sobic004G322100--Sobic003G140700 Sobic004G322100--Sobic004G323300 Sobic004G306900 Sobic004G306900 Sobic004G322100--Sobic004G306900 Sobic006G019700 Sobic006G019700 Sobic004G322100--Sobic006G019700 Sobic004G029100 Sobic004G029100 Sobic004G322100--Sobic004G029100 Sobic006G028500 Sobic006G028500 Sobic004G322100--Sobic006G028500 Sobic004G110700 Sobic004G110700 Sobic004G322100--Sobic004G110700 Sobic004G323300--Sobic004G322100 Sobic001G238200 Sobic001G238200 Sobic004G323300--Sobic001G238200 Sobic003G064800 Sobic003G064800 Sobic004G323300--Sobic003G064800 Sobic004G323300--Sobic003G140700 Sobic006G227500 Sobic006G227500 Sobic004G323300--Sobic006G227500 Sobic004G323300--Sobic004G306900 Sobic004G323300--Sobic007G050200 Sobic001G229000 Sobic001G229000 Sobic004G323300--Sobic001G229000 Sobic007G086300 Sobic007G086300 Sobic004G323300--Sobic007G086300 Sobic009G221500--Sobic007G050200 Sobic009G221500--Sobic006G256900 Sobic009G221500--Sobic009G219200 Sobic009G221500--Sobic004G322100 Sobic010G148800 Sobic010G148800 Sobic009G221500--Sobic010G148800 Sobic009G221500--Sobic009G199001 Sobic009G221500--Sobic004G323300 Sobic001G438200 Sobic001G438200 Sobic009G221500--Sobic001G438200 Sobic009G221500--Sobic001G430100 Sobic003G140700--Sobic009G219200 Sobic003G140700--Sobic003G064800 Sobic006G225500 Sobic006G225500 Sobic003G140700--Sobic006G225500 Sobic003G140700--Sobic004G322100 Sobic003G140700--Sobic001G438200 Sobic002G255000 Sobic002G255000 Sobic003G140700--Sobic002G255000 Sobic003G140700--Sobic001G238200 Sobic005G127400 Sobic005G127400 Sobic003G140700--Sobic005G127400 Sobic003G140700--Sobic004G110700 Sobic002G183700 Sobic002G183700 Sobic001G430100--Sobic002G183700 Sobic003G311800 Sobic003G311800 Sobic001G430100--Sobic003G311800 Sobic001G430100--Sobic007G050200 Sobic001G049900 Sobic001G049900 Sobic001G430100--Sobic001G049900 Sobic002G001700 Sobic002G001700 Sobic001G430100--Sobic002G001700 Sobic004G348800 Sobic004G348800 Sobic001G430100--Sobic004G348800 Sobic004G297900 Sobic004G297900 Sobic001G430100--Sobic004G297900 Sobic006G197100 Sobic006G197100 Sobic001G430100--Sobic006G197100 Sobic009G109000 Sobic009G109000 Sobic001G430100--Sobic009G109000 Sobic006G256900--Sobic010G148800 Sobic005G065900 Sobic005G065900 Sobic006G256900--Sobic005G065900 Sobic006G256900--Sobic007G050200 Sobic006G256900--Sobic009G199001 Sobic006G256900--Sobic006G197100 Sobic006G256900--Sobic009G221500 Sobic006G256900--Sobic003G140700 Sobic006G256900--Sobic004G322100 Sobic006G256900--Sobic001G058300 Sobic001G058300--Sobic001G238200 Sobic001G058300--Sobic001G438200 Sobic001G058300--Sobic003G140700 Sobic003G319400 Sobic003G319400 Sobic001G058300--Sobic003G319400 Sobic001G058300--Sobic004G306900 Sobic005G202300 Sobic005G202300 Sobic001G058300--Sobic005G202300 Sobic003G282200 Sobic003G282200 Sobic001G058300--Sobic003G282200 Sobic006G106900 Sobic006G106900 Sobic001G058300--Sobic006G106900 Sobic006G174300 Sobic006G174300 Sobic001G058300--Sobic006G174300 Sobic009G199001--Sobic009G219200 Sobic009G199001--Sobic010G148800 Sobic009G199001--Sobic001G058300 Sobic009G199001--Sobic003G140700 Sobic009G199001--Sobic006G256900 Sobic009G199001--Sobic007G050200 Sobic009G199001--Sobic001G438200 Sobic004G209400 Sobic004G209400 Sobic009G199001--Sobic004G209400 Sobic009G074500 Sobic009G074500 Sobic009G199001--Sobic009G074500 Sobic009G219200--Sobic003G140700 Sobic009G219200--Sobic001G438200 Sobic001G237800 Sobic001G237800 Sobic009G219200--Sobic001G237800 Sobic009G219200--Sobic002G255000 Sobic009G219200--Sobic003G064800 Sobic009G219200--Sobic004G306900 Sobic006G079300 Sobic006G079300 Sobic009G219200--Sobic006G079300 Sobic001G238000 Sobic001G238000 Sobic009G219200--Sobic001G238000 Sobic009G219200--Sobic001G238200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.