Gene annotation
| Transcriptome id | Sobic.004G348800.1 |
|---|---|
| Synonym | lateral organ boundaries, Sb04g037550, SbLBD21, ASL18, LBD16 |
| Functional annotation | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments" (PubMedID : 20499123) DUF260 domain containing protein, putative, expressed |
| UniProt | C5XVZ8 |
| Pfam | PF03195 |
| Panther DB | PTHR31529 PTHR31529:SF9 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G42430 : lateral organ boundaries-domain 16 |
|---|---|
| RAP-DB (Rice) | LOC_Os02g57490.1 : DUF260 domain containing protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a053423 , Zm00025a000662 , Zm00025a000663 , Zm00025a032775 |
| Brachypodium | KQJ88008 , KQK01414 , KQK23638 |
| Barley | HORVU4Hr1G080150.1 , HORVU4Hr1G080150.2 , HORVU0Hr1G017670.1 , HORVU0Hr1G017670.2 , HORVU4Hr1G080160.1 , HORVU4Hr1G080160.3 , HORVU4Hr1G080160.2 , HORVU0Hr1G017670.3 , HORVU0Hr1G017670.5 , HORVU0Hr1G017670.4 |
| Wheat | TraesCS6B02G438700 , TraesCS6D02G382600 , TraesCS6A02G398400 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G264000 | dehydrogenase, putative, expressed | K00001: E1.1.1.1, alcohol dehydrogenase |
| 2 | Sobic.005G215400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed | - |
| 3 | Sobic.010G212500 | - | - |
| 4 | Sobic.001G430100 | - | - |
| 5 | Sobic.002G003800 | plastocyanin-like domain containing protein, putative, expressed | - |
| 6 | Sobic.006G197100 | DNA binding protein, putative, expressed | - |
| 7 | Sobic.009G109000 | expressed protein | - |
| 8 | Sobic.003G311800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed | - |
| 9 | Sobic.007G050200 | DNA binding protein, putative, expressed | - |
| 10 | Sobic.004G209400 | carbonyl reductase 3, putative, expressed | - |
| 11 | Sobic.002G404100 | annexin, putative, expressed | - |
| 12 | Sobic.003G269600 | "CYP711A family, the cytochrome P450 homepage. Catalyzed the conversion of carlactone (CL) to carlactonoic acid (CLA)."(PubMedID : 33793911)@Synthesized carlactonoic acid (CLA) from carlactone (CL).(PubMedID : 34970291)@cytochrome P450, putative, expressed | - |
| 13 | Sobic.002G124500 | expansin precursor, putative, expressed | - |
| 14 | Sobic.006G202600 | Up-reguralion under heat(PubMedID : 24916767)@immutans protein, putative, expressed | K17893: AOX1, ubiquinol oxidase |
| 15 | Sobic.004G139300 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 71D10, putative, expressed | - |
| 16 | Sobic.006G170600 | tonoplast intrinsic protein("PubMedID : 26759170,PubMedID : 24597475")@aquaporin protein, putative, expressed | K09873: aquaporin TIP |
| 17 | Sobic.002G261500 | AIR12, putative, expressed | - |
| 18 | Sobic.007G204700 | expressed protein | - |
| 19 | Sobic.002G183700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@L-ascorbate oxidase precursor, putative, expressed | - |
| 20 | Sobic.002G365550 | - | - |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
