Gene annotation
| Transcriptome id | Sobic.002G124500.1 |
|---|---|
| Synonym | ATHEXPBETA1.1, Sb02g010730, ATEXPB4, EXPB4 |
| Functional annotation | expansin precursor, putative, expressed |
| UniProt | C5X543 |
| Pfam | PF03330 PF01357 |
| Panther DB | PTHR31692 PTHR31692:SF8 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G45110 : expansin B4 |
|---|---|
| RAP-DB (Rice) | LOC_Os02g44108.1 : expansin precursor, putative, expressed |
| MaizeGDB (Corn) | Zm00025a045834 , Zm00025a020872 |
| Brachypodium | KQK00631 |
| Barley | HORVU0Hr1G018320.2 , HORVU0Hr1G018320.3 , HORVU0Hr1G018320.1 , HORVU0Hr1G018320.6 , HORVU0Hr1G018320.7 , HORVU0Hr1G018320.4 , HORVU0Hr1G018320.5 , HORVU0Hr1G018320.8 , HORVU6Hr1G063180.1 , HORVU0Hr1G016410.1 |
| Wheat | TraesCS6A02G249300 , TraesCS6B02G275700 , TraesCS6D02G231300 , TraesCS6B02G275800 , TraesCS6A02G249200 , TraesCS6D02G231200 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G053400 | hydrolase, alpha/beta fold family protein, putative, expressed | - |
| 2 | Sobic.K026900 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 3 | Sobic.001G508532 | - | - |
| 4 | Sobic.002G425000 | VQ domain containing protein, putative, expressed | - |
| 5 | Sobic.004G348800 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 6 | Sobic.010G158500 | Zinc finger, C3HC4 type domain containing protein, expressed | - |
| 7 | Sobic.003G053300 | myb-like DNA-binding domain containing protein, putative, expressed | K09422: transcription factor MYB, plant |
| 8 | Sobic.010G212500 | - | - |
| 9 | Sobic.006G202600 | Up-reguralion under heat(PubMedID : 24916767)@immutans protein, putative, expressed | K17893: AOX1, ubiquinol oxidase |
| 10 | Sobic.001G237900 | expansin precursor, putative, expressed | - |
| 11 | Sobic.010G196000 | DNA binding protein, putative, expressed | - |
| 12 | Sobic.002G261500 | AIR12, putative, expressed | - |
| 13 | Sobic.001G238300 | expansin precursor, putative, expressed | - |
| 14 | Sobic.005G067500 | 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed | K05933: aminocyclopropanecarboxylate oxidase |
| 15 | Sobic.010G271300 | carrier, putative, expressed | - |
| 16 | Sobic.004G297900 | plastocyanin-like domain containing protein, putative, expressed | - |
| 17 | Sobic.004G295100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed | K09873: aquaporin TIP |
| 18 | Sobic.002G365550 | - | - |
| 19 | Sobic.009G109000 | expressed protein | - |
| 20 | Sobic.006G170600 | tonoplast intrinsic protein("PubMedID : 26759170,PubMedID : 24597475")@aquaporin protein, putative, expressed | K09873: aquaporin TIP |
Gene co-expression network
Octagon: transcription factors
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