Gene annotation
| Transcriptome id | Sobic.001G508532.1 |
|---|---|
| Synonym | - |
| Functional annotation | - |
| UniProt | A0A1Z5SBG0 |
| Pfam | PF17123 PF14624 PF13519 |
| Panther DB | PTHR10579 PTHR10579:SF51 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G38970 : Zinc finger (C3HC4-type RING finger) family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os10g32760.1 : zinc finger family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a000570 |
| Brachypodium | PNT78231 , KQJ96994 |
| Barley | HORVU4Hr1G084370.1 , HORVU4Hr1G084330.1 , HORVU4Hr1G084380.1 , HORVU4Hr1G084380.2 , HORVU0Hr1G005150.5 , HORVU0Hr1G005150.4 , HORVU0Hr1G005150.3 , HORVU0Hr1G005150.2 , HORVU0Hr1G005150.1 , HORVU1Hr1G092690.1 |
| Wheat | TraesCS1D02G433500 , TraesCS2D02G459400 , TraesCS4B02G344200 , TraesCS5A02G513000 , TraesCS4D02G339300 , TraesCS2A02G045100 , TraesCS2B02G377900 , TraesCS2A02G358400 , TraesCS2D02G357400 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G202600 | Up-reguralion under heat(PubMedID : 24916767)@immutans protein, putative, expressed | K17893: AOX1, ubiquinol oxidase |
| 2 | Sobic.002G124500 | expansin precursor, putative, expressed | - |
| 3 | Sobic.004G318700 | OsSub22 - Putative Subtilisin homologue, expressed | - |
| 4 | Sobic.010G196000 | DNA binding protein, putative, expressed | - |
| 5 | Sobic.004G295100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed | K09873: aquaporin TIP |
| 6 | Sobic.005G067500 | 1-aminocyclopropane-1-carboxylate oxidase, putative, expressed | K05933: aminocyclopropanecarboxylate oxidase |
| 7 | Sobic.010G106500 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 8 | Sobic.001G264000 | dehydrogenase, putative, expressed | K00001: E1.1.1.1, alcohol dehydrogenase |
| 9 | Sobic.006G170600 | tonoplast intrinsic protein("PubMedID : 26759170,PubMedID : 24597475")@aquaporin protein, putative, expressed | K09873: aquaporin TIP |
| 10 | Sobic.003G093700 | expressed protein | - |
| 11 | Sobic.002G213600 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR38 - Auxin-responsive SAUR gene family member, expressed | K14488: SAUR family protein |
| 12 | Sobic.003G360600 | cytochrome P450, putative, expressed | K15401: long-chain fatty acid omega-monooxygenase |
| 13 | Sobic.004G348800 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 14 | Sobic.001G237900 | expansin precursor, putative, expressed | - |
| 15 | Sobic.007G090469 | - | - |
| 16 | Sobic.003G311800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed | - |
| 17 | Sobic.001G416200 | Responsive to hight light 41(PubMedID : 26320239)@ZOS3-09 - C2H2 zinc finger protein, expressed | - |
| 18 | Sobic.003G269600 | "CYP711A family, the cytochrome P450 homepage. Catalyzed the conversion of carlactone (CL) to carlactonoic acid (CLA)."(PubMedID : 33793911)@Synthesized carlactonoic acid (CLA) from carlactone (CL).(PubMedID : 34970291)@cytochrome P450, putative, expressed | - |
| 19 | Sobic.001G395800 | SMP-30/Gluconolaconase/LRE domain protein, putative, expressed | - |
| 20 | Sobic.010G271300 | carrier, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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