Gene annotation
Transcriptome id Sobic.004G295100.1
Synonym TIP2, Sb04g032900, ATTIP2, 3, DELTA-TIP3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
aquaporin protein, putative, expressed
UniProt A0A194YSD4
Pfam PF00230
Panther DB PTHR19139 PTHR19139:SF134
NCBI CDD KOG0223; Aquaporin (major intrinsic protein family)
KEGG Orthology K09873; aquaporin TIP
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT5G47450 : tonoplast intrinsic protein 2;3
RAP-DB (Rice) LOC_Os02g44080.1 : aquaporin protein, putative, expressed
MaizeGDB (Corn) Zm00025a039037 , Zm00025a010306 , Zm00025a020879 , Zm00025a056873 , Zm00025a032208
Brachypodium KQK11808 , KQK00616 , KQJ83938
Barley HORVU7Hr1G081770.8 , HORVU7Hr1G081770.9 , HORVU7Hr1G081770.4 , HORVU7Hr1G081770.5 , HORVU7Hr1G081770.6 , HORVU7Hr1G081770.1 , HORVU7Hr1G081770.2 , HORVU7Hr1G081770.10 , HORVU6Hr1G062980.1 , HORVU6Hr1G062980.2 , HORVU2Hr1G097780.5 , HORVU2Hr1G097780.4 , HORVU2Hr1G097780.3 , HORVU2Hr1G097780.2 , HORVU2Hr1G097780.1 , HORVU3Hr1G116790.1 , HORVU4Hr1G079230.4 , HORVU3Hr1G116790.3 , HORVU3Hr1G116790.2 , HORVU4Hr1G079230.1 , HORVU3Hr1G116790.4 , HORVU4Hr1G079230.2 , HORVU3Hr1G116790.9 , HORVU3Hr1G116790.5 , HORVU3Hr1G116790.6 , HORVU0Hr1G032130.3 , HORVU0Hr1G032130.2 , HORVU0Hr1G032130.1 , HORVU3Hr1G116790.12
Wheat TraesCS6D02G232100 , TraesCS7A02G331300 , TraesCS7D02G339600 , TraesCS7D02G339600 , TraesCS7D02G339600 , TraesCS2D02G370800 , TraesCS2A02G414100 , TraesCS4A02G410800 , TraesCS4B02G310900 , TraesCS3D02G540900 , TraesCS3B02G608500 , TraesCS3A02G535300 , TraesCS6A02G250300 , TraesCS2D02G411400 , TraesCS6B02G275100 , TraesCS2B02G433200 , TraesCS7B02G243000 , TraesCS7B02G243000 , TraesCS4D02G308800
Populus -


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cDNA sequences
Sobic.004G295100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G196000 DNA binding protein, putative, expressed -
2 Sobic.004G297900 plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.008G009400 - -
4 Sobic.006G202600 Up-reguralion under heat(PubMedID : 24916767)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
5 Sobic.001G330300 RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed -
6 Sobic.003G311800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed -
7 Sobic.006G235200 expressed protein -
8 Sobic.001G300500 expansin precursor, putative, expressed -
9 Sobic.007G090469 - -
10 Sobic.009G188000 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)
11 Sobic.003G299300 expressed protein -
12 Sobic.006G050800 expressed protein -
13 Sobic.004G180700 expressed protein -
14 Sobic.K026900 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.006G172550 - -
16 Sobic.001G112100 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
17 Sobic.002G327100 expressed protein -
18 Sobic.003G053300 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.002G105300 SCP-like extracellular protein, expressed -
20 Sobic.002G213600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR38 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein


Gene co-expression network
sample Sobic004G295100 Sobic004G295100 Sobic010G196000 Sobic010G196000 Sobic004G295100--Sobic010G196000 Sobic004G297900 Sobic004G297900 Sobic004G295100--Sobic004G297900 Sobic008G009400 Sobic008G009400 Sobic004G295100--Sobic008G009400 Sobic006G202600 Sobic006G202600 Sobic004G295100--Sobic006G202600 Sobic001G330300 Sobic001G330300 Sobic004G295100--Sobic001G330300 Sobic003G311800 Sobic003G311800 Sobic004G295100--Sobic003G311800 Sobic006G235200 Sobic006G235200 Sobic004G295100--Sobic006G235200 Sobic001G300500 Sobic001G300500 Sobic004G295100--Sobic001G300500 Sobic007G090469 Sobic007G090469 Sobic004G295100--Sobic007G090469 Sobic010G196000--Sobic004G295100 Sobic010G196000--Sobic006G202600 Sobic004G180700 Sobic004G180700 Sobic010G196000--Sobic004G180700 Sobic006G050800 Sobic006G050800 Sobic010G196000--Sobic006G050800 Sobic003G426600 Sobic003G426600 Sobic010G196000--Sobic003G426600 Sobic002G105300 Sobic002G105300 Sobic010G196000--Sobic002G105300 Sobic010G196000--Sobic001G330300 Sobic009G188000 Sobic009G188000 Sobic010G196000--Sobic009G188000 Sobic005G067500 Sobic005G067500 Sobic010G196000--Sobic005G067500 Sobic004G297900--Sobic003G311800 Sobic004G297900--Sobic008G009400 Sobic004G297900--Sobic006G235200 Sobic001G238300 Sobic001G238300 Sobic004G297900--Sobic001G238300 Sobic004G297900--Sobic004G295100 Sobic004G297900--Sobic001G300500 Sobic009G109000 Sobic009G109000 Sobic004G297900--Sobic009G109000 Sobic002G261500 Sobic002G261500 Sobic004G297900--Sobic002G261500 SobicK026900 SobicK026900 Sobic004G297900--SobicK026900 Sobic008G009400--Sobic004G297900 Sobic008G009400--Sobic004G295100 Sobic002G351300 Sobic002G351300 Sobic008G009400--Sobic002G351300 Sobic003G299300 Sobic003G299300 Sobic008G009400--Sobic003G299300 Sobic010G270700 Sobic010G270700 Sobic008G009400--Sobic010G270700 Sobic004G141100 Sobic004G141100 Sobic008G009400--Sobic004G141100 Sobic008G009400--Sobic009G188000 Sobic008G009400--Sobic006G235200 Sobic008G009400--Sobic001G330300 Sobic006G202600--Sobic004G180700 Sobic006G202600--Sobic010G196000 Sobic006G202600--Sobic004G295100 Sobic006G170600 Sobic006G170600 Sobic006G202600--Sobic006G170600 Sobic004G301600 Sobic004G301600 Sobic006G202600--Sobic004G301600 Sobic006G202600--SobicK026900 Sobic006G202600--Sobic006G050800 Sobic001G508532 Sobic001G508532 Sobic006G202600--Sobic001G508532 Sobic006G202600--Sobic007G090469 Sobic001G330300--Sobic003G299300 Sobic001G330300--Sobic004G295100 Sobic001G330300--Sobic008G009400 Sobic001G330300--Sobic006G050800 Sobic001G330300--Sobic010G270700 Sobic001G330300--Sobic004G141100 Sobic001G330300--Sobic010G196000 Sobic001G242000 Sobic001G242000 Sobic001G330300--Sobic001G242000 Sobic003G282100 Sobic003G282100 Sobic001G330300--Sobic003G282100 Sobic003G311800--Sobic004G297900 Sobic002G003800 Sobic002G003800 Sobic003G311800--Sobic002G003800 Sobic001G049900 Sobic001G049900 Sobic003G311800--Sobic001G049900 Sobic003G311800--Sobic009G109000 Sobic006G197100 Sobic006G197100 Sobic003G311800--Sobic006G197100 Sobic006G274933 Sobic006G274933 Sobic003G311800--Sobic006G274933 Sobic002G183700 Sobic002G183700 Sobic003G311800--Sobic002G183700 Sobic003G311800--Sobic007G090469 Sobic004G042000 Sobic004G042000 Sobic003G311800--Sobic004G042000 Sobic006G235200--Sobic004G297900 Sobic006G235200--Sobic004G295100 Sobic006G235200--Sobic008G009400 Sobic006G235200--Sobic001G300500 Sobic006G235200--Sobic003G311800 Sobic006G235200--Sobic003G299300 Sobic006G172550 Sobic006G172550 Sobic006G235200--Sobic006G172550 Sobic006G235200--Sobic002G183700 Sobic002G092600 Sobic002G092600 Sobic006G235200--Sobic002G092600 Sobic001G300500--Sobic004G297900 Sobic001G300500--Sobic003G311800 Sobic001G300500--Sobic004G295100 Sobic001G300500--Sobic007G090469 Sobic001G300500--Sobic006G172550 Sobic001G300500--Sobic006G235200 Sobic001G300500--Sobic001G238300 Sobic006G172601 Sobic006G172601 Sobic001G300500--Sobic006G172601 Sobic001G300500--SobicK026900 Sobic007G090469--Sobic006G172601 Sobic007G090469--Sobic004G297900 Sobic007G090469--Sobic003G311800 Sobic007G090469--SobicK026900 Sobic007G090469--Sobic001G238300 Sobic004G209400 Sobic004G209400 Sobic007G090469--Sobic004G209400 Sobic007G090469--Sobic004G295100 Sobic005G156500 Sobic005G156500 Sobic007G090469--Sobic005G156500 Sobic007G090469--Sobic001G300500
Octagon: transcription factors


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