Gene annotation
Transcriptome id Sobic.001G330300.1
Synonym Sb01g031910
Functional annotation RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed
UniProt C5WVM0
Pfam PF06830
Panther DB PTHR31656 PTHR31656:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G19430 : late embryogenesis abundant protein-related / LEA protein-related
RAP-DB (Rice) LOC_Os01g73720.1 : RCLEA4 - Root cap and Late embryogenesis related family protein precursor, expressed
MaizeGDB (Corn) Zm00025a052221 , Zm00025a033481 , Zm00025a011534 , Zm00025a002979 , Zm00025a025854 , Zm00025a039058 , Zm00025a025852 , Zm00025a025851
Brachypodium KQK11721 , KQJ82493 , KQJ92264 , KQJ92269 , KQK08082
Barley HORVU3Hr1G113530.1 , HORVU1Hr1G002950.3 , HORVU3Hr1G113540.2 , HORVU3Hr1G113540.1 , HORVU3Hr1G113430.2 , HORVU3Hr1G113430.1 , HORVU3Hr1G099570.1 , HORVU3Hr1G113530.6 , HORVU3Hr1G113530.4 , HORVU3Hr1G113530.5 , HORVU3Hr1G113530.2 , HORVU3Hr1G113530.3 , HORVU3Hr1G113450.2 , HORVU3Hr1G113440.2 , HORVU3Hr1G113440.1 , HORVU3Hr1G113560.1 , HORVU1Hr1G002950.2 , HORVU1Hr1G002950.1
Wheat TraesCS4B02G327400 , TraesCS4D02G324500 , TraesCS3B02G587200 , TraesCS3D02G525900 , TraesCS3A02G518700 , TraesCS2D02G291700 , TraesCS1D02G022800 , TraesCS2D02G291400 , TraesCS4D02G324300 , TraesCS2A02G293800 , TraesCS2B02G310100 , TraesCS3B02G586400 , TraesCS3D02G526000 , TraesCS1A02G023300 , TraesCS3B02G512300 , TraesCS3D02G461500 , TraesCS3A02G468400 , TraesCS2A02G294100 , TraesCS2B02G310400 , TraesCS3B02G586200 , TraesCS4D02G324400 , TraesCS3B02G586300 , TraesCS1B02G029000 , TraesCS3A02G518800 , TraesCS3A02G518300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G299300 expressed protein -
2 Sobic.004G295100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09873: aquaporin TIP
3 Sobic.008G009400 - -
4 Sobic.006G050800 expressed protein -
5 Sobic.010G270700 GDSL-like lipase/acylhydrolase, putative, expressed -
6 Sobic.004G141100 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
7 Sobic.010G196000 DNA binding protein, putative, expressed -
8 Sobic.001G242000 CSLF7 - cellulose synthase-like family F@ beta1,3@1,4 glucan synthase, expressed -
9 Sobic.003G282100 POEI44 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
10 Sobic.002G176100 membrane protein, putative, expressed -
11 Sobic.006G158400 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
12 Sobic.003G007600 expressed protein -
13 Sobic.K026900 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.009G188000 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)
15 Sobic.003G311800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed -
16 Sobic.009G111000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed K01051: pectinesterase
17 Sobic.006G202600 Up-reguralion under heat(PubMedID : 24916767)@immutans protein, putative, expressed K17893: AOX1, ubiquinol oxidase
18 Sobic.006G103000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.006G141700 OsGrx_C2.2 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
20 Sobic.004G297900 plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G330300 Sobic001G330300 Sobic003G299300 Sobic003G299300 Sobic001G330300--Sobic003G299300 Sobic004G295100 Sobic004G295100 Sobic001G330300--Sobic004G295100 Sobic008G009400 Sobic008G009400 Sobic001G330300--Sobic008G009400 Sobic006G050800 Sobic006G050800 Sobic001G330300--Sobic006G050800 Sobic010G270700 Sobic010G270700 Sobic001G330300--Sobic010G270700 Sobic004G141100 Sobic004G141100 Sobic001G330300--Sobic004G141100 Sobic010G196000 Sobic010G196000 Sobic001G330300--Sobic010G196000 Sobic001G242000 Sobic001G242000 Sobic001G330300--Sobic001G242000 Sobic003G282100 Sobic003G282100 Sobic001G330300--Sobic003G282100 Sobic003G007600 Sobic003G007600 Sobic003G299300--Sobic003G007600 Sobic003G299300--Sobic008G009400 Sobic003G299300--Sobic001G330300 Sobic010G270500 Sobic010G270500 Sobic003G299300--Sobic010G270500 Sobic009G188000 Sobic009G188000 Sobic003G299300--Sobic009G188000 Sobic001G238400 Sobic001G238400 Sobic003G299300--Sobic001G238400 Sobic001G304100 Sobic001G304100 Sobic003G299300--Sobic001G304100 Sobic003G299300--Sobic004G295100 Sobic006G103000 Sobic006G103000 Sobic003G299300--Sobic006G103000 Sobic004G295100--Sobic010G196000 Sobic004G297900 Sobic004G297900 Sobic004G295100--Sobic004G297900 Sobic004G295100--Sobic008G009400 Sobic006G202600 Sobic006G202600 Sobic004G295100--Sobic006G202600 Sobic004G295100--Sobic001G330300 Sobic003G311800 Sobic003G311800 Sobic004G295100--Sobic003G311800 Sobic006G235200 Sobic006G235200 Sobic004G295100--Sobic006G235200 Sobic001G300500 Sobic001G300500 Sobic004G295100--Sobic001G300500 Sobic007G090469 Sobic007G090469 Sobic004G295100--Sobic007G090469 Sobic008G009400--Sobic004G297900 Sobic008G009400--Sobic004G295100 Sobic002G351300 Sobic002G351300 Sobic008G009400--Sobic002G351300 Sobic008G009400--Sobic003G299300 Sobic008G009400--Sobic010G270700 Sobic008G009400--Sobic004G141100 Sobic008G009400--Sobic009G188000 Sobic008G009400--Sobic006G235200 Sobic008G009400--Sobic001G330300 Sobic004G180700 Sobic004G180700 Sobic006G050800--Sobic004G180700 Sobic006G050800--Sobic010G196000 Sobic006G050800--Sobic001G330300 Sobic006G050800--Sobic006G202600 Sobic006G050800--Sobic004G295100 Sobic004G301600 Sobic004G301600 Sobic006G050800--Sobic004G301600 Sobic002G301900 Sobic002G301900 Sobic006G050800--Sobic002G301900 Sobic003G136200 Sobic003G136200 Sobic006G050800--Sobic003G136200 Sobic010G009900 Sobic010G009900 Sobic006G050800--Sobic010G009900 Sobic010G270700--Sobic003G282100 Sobic010G270700--Sobic008G009400 Sobic010G270700--Sobic001G330300 SobicK026900 SobicK026900 Sobic010G270700--SobicK026900 Sobic010G270700--Sobic004G297900 Sobic010G270700--Sobic003G299300 Sobic008G127933 Sobic008G127933 Sobic010G270700--Sobic008G127933 Sobic010G270700--Sobic003G311800 Sobic009G109000 Sobic009G109000 Sobic010G270700--Sobic009G109000 Sobic004G141100--Sobic002G351300 Sobic006G235100 Sobic006G235100 Sobic004G141100--Sobic006G235100 Sobic010G082600 Sobic010G082600 Sobic004G141100--Sobic010G082600 Sobic007G017500 Sobic007G017500 Sobic004G141100--Sobic007G017500 Sobic006G075400 Sobic006G075400 Sobic004G141100--Sobic006G075400 Sobic004G141100--Sobic008G009400 Sobic006G054800 Sobic006G054800 Sobic004G141100--Sobic006G054800 Sobic006G008000 Sobic006G008000 Sobic004G141100--Sobic006G008000 Sobic008G066401 Sobic008G066401 Sobic004G141100--Sobic008G066401 Sobic010G196000--Sobic004G295100 Sobic010G196000--Sobic006G202600 Sobic010G196000--Sobic004G180700 Sobic010G196000--Sobic006G050800 Sobic003G426600 Sobic003G426600 Sobic010G196000--Sobic003G426600 Sobic002G105300 Sobic002G105300 Sobic010G196000--Sobic002G105300 Sobic010G196000--Sobic001G330300 Sobic010G196000--Sobic009G188000 Sobic005G067500 Sobic005G067500 Sobic010G196000--Sobic005G067500 Sobic007G054900 Sobic007G054900 Sobic001G242000--Sobic007G054900 Sobic002G369400 Sobic002G369400 Sobic001G242000--Sobic002G369400 Sobic002G063800 Sobic002G063800 Sobic001G242000--Sobic002G063800 Sobic001G242000--Sobic001G330300 Sobic001G242000--Sobic010G270700 Sobic010G062300 Sobic010G062300 Sobic001G242000--Sobic010G062300 Sobic001G242000--Sobic006G050800 Sobic001G242000--Sobic010G009900 Sobic001G449100 Sobic001G449100 Sobic001G242000--Sobic001G449100 Sobic003G282100--Sobic010G270700 Sobic003G282100--Sobic001G330300 Sobic003G282100--Sobic003G007600 Sobic003G282100--Sobic008G009400 Sobic003G282100--Sobic003G299300 Sobic003G282100--Sobic006G103000 Sobic002G176100 Sobic002G176100 Sobic003G282100--Sobic002G176100 Sobic003G282100--SobicK026900 Sobic009G111000 Sobic009G111000 Sobic003G282100--Sobic009G111000
Octagon: transcription factors


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