Gene annotation
| Transcriptome id | Sobic.004G318700.1 |
|---|---|
| Synonym | Sb04g034950 |
| Functional annotation | OsSub22 - Putative Subtilisin homologue, expressed |
| UniProt | C5XTM2 |
| Pfam | PF00082 PF02225 PF05922 |
| Panther DB | PTHR10795:SF406 PTHR10795 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0004252; serine-type endopeptidase activity GO:0006508proteolysis |
Orthologs (automatic annotation)
| TAIR | AT3G14067 : Subtilase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g53860.1 : OsSub22 - Putative Subtilisin homologue, expressed |
| MaizeGDB (Corn) | Zm00025a037303 , Zm00025a056746 , Zm00025a051594 , Zm00025a033027 , Zm00025a022349 |
| Brachypodium | KQK01622 , KQJ84132 , PNT64802 |
| Barley | HORVU5Hr1G071950.1 , HORVU5Hr1G071950.2 , HORVU6Hr1G081640.1 , HORVU6Hr1G081710.2 , HORVU6Hr1G081710.1 , HORVU6Hr1G081730.1 , HORVU6Hr1G081750.2 , HORVU6Hr1G081750.1 |
| Wheat | TraesCS5B02G255200 , TraesCS6D02G319900 , TraesCS5B02G186700 , TraesCS6A02G337900 , TraesCS5D02G194300 , TraesCS2B02G532700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G416200 | Responsive to hight light 41(PubMedID : 26320239)@ZOS3-09 - C2H2 zinc finger protein, expressed | - |
| 2 | Sobic.001G238400 | expansin precursor, putative, expressed | - |
| 3 | Sobic.001G304100 | LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 4 | Sobic.001G161500 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA12 - Auxin-responsive Aux/IAA gene family member, expressed | K14484: auxin-responsive protein IAA |
| 5 | Sobic.002G213600 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR38 - Auxin-responsive SAUR gene family member, expressed | K14488: SAUR family protein |
| 6 | Sobic.009G188000 | NADPH-dependent FMN reductase domain containing protein, expressed | K03809: NAD(P)H dehydrogenase (quinone) |
| 7 | Sobic.001G237900 | expansin precursor, putative, expressed | - |
| 8 | Sobic.004G349125 | - | - |
| 9 | Sobic.004G202400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@high affinity nitrate transporter, putative, expressed | - |
| 10 | Sobic.001G302600 | LTPL147 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 11 | Sobic.004G042000 | apoptosis-inducing factor 2, putative, expressed | - |
| 12 | Sobic.003G311800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed | - |
| 13 | Sobic.003G016100 | expressed protein | - |
| 14 | Sobic.010G271300 | carrier, putative, expressed | - |
| 15 | Sobic.004G295100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed | K09873: aquaporin TIP |
| 16 | Sobic.004G297900 | plastocyanin-like domain containing protein, putative, expressed | - |
| 17 | Sobic.009G088900 | membrane associated DUF588 domain containing protein, putative, expressed | - |
| 18 | Sobic.010G196000 | DNA binding protein, putative, expressed | - |
| 19 | Sobic.009G106400 | GCRP10 - Glycine and cysteine rich family protein precursor, expressed | - |
| 20 | Sobic.009G109000 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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