Gene annotation
Transcriptome id Sobic.009G088900.1
Synonym Sb09g008190
Functional annotation membrane associated DUF588 domain containing protein, putative, expressed
UniProt C5YVA2
Pfam PF04535
Panther DB PTHR11615 PTHR11615:SF131
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G03700 : Uncharacterised protein family (UPF0497)
RAP-DB (Rice) LOC_Os05g15630.1 : membrane associated DUF588 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a037148
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G055100 dirigent, putative, expressed -
2 Sobic.001G059700 LTPL73 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
3 Sobic.003G053400 hydrolase, alpha/beta fold family protein, putative, expressed -
4 Sobic.005G061200 dirigent, putative, expressed -
5 Sobic.002G365801 - -
6 Sobic.002G154600 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
7 Sobic.007G218800 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase
8 Sobic.002G261500 AIR12, putative, expressed -
9 Sobic.002G368300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@COBRA-like protein precursor, putative, expressed -
10 Sobic.010G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.001G049900 UDP-rhamnose rhamnosyltransferase, putative, expressed -
12 Sobic.007G176000 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
13 Sobic.004G318700 OsSub22 - Putative Subtilisin homologue, expressed -
14 Sobic.009G109000 expressed protein -
15 Sobic.004G297900 plastocyanin-like domain containing protein, putative, expressed -
16 Sobic.009G232100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@fasciclin domain containing protein, expressed -
17 Sobic.010G212500 - -
18 Sobic.003G311800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed -
19 Sobic.005G073000 stress responsive protein, putative, expressed -
20 Sobic.004G071000 "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase


Gene co-expression network
sample Sobic009G088900 Sobic009G088900 Sobic008G055100 Sobic008G055100 Sobic009G088900--Sobic008G055100 Sobic001G059700 Sobic001G059700 Sobic009G088900--Sobic001G059700 Sobic003G053400 Sobic003G053400 Sobic009G088900--Sobic003G053400 Sobic005G061200 Sobic005G061200 Sobic009G088900--Sobic005G061200 Sobic002G365801 Sobic002G365801 Sobic009G088900--Sobic002G365801 Sobic002G154600 Sobic002G154600 Sobic009G088900--Sobic002G154600 Sobic007G218800 Sobic007G218800 Sobic009G088900--Sobic007G218800 Sobic002G261500 Sobic002G261500 Sobic009G088900--Sobic002G261500 Sobic002G368300 Sobic002G368300 Sobic009G088900--Sobic002G368300 Sobic008G055100--Sobic009G088900 Sobic001G514200 Sobic001G514200 Sobic008G055100--Sobic001G514200 Sobic009G109000 Sobic009G109000 Sobic008G055100--Sobic009G109000 Sobic008G055100--Sobic007G218800 Sobic010G096400 Sobic010G096400 Sobic008G055100--Sobic010G096400 Sobic001G049900 Sobic001G049900 Sobic008G055100--Sobic001G049900 Sobic007G176000 Sobic007G176000 Sobic008G055100--Sobic007G176000 Sobic007G178900 Sobic007G178900 Sobic008G055100--Sobic007G178900 Sobic008G055100--Sobic002G154600 Sobic010G085800 Sobic010G085800 Sobic001G059700--Sobic010G085800 Sobic001G059700--Sobic009G088900 Sobic007G159450 Sobic007G159450 Sobic001G059700--Sobic007G159450 Sobic001G238400 Sobic001G238400 Sobic001G059700--Sobic001G238400 Sobic004G318700 Sobic004G318700 Sobic001G059700--Sobic004G318700 Sobic001G310300 Sobic001G310300 Sobic001G059700--Sobic001G310300 Sobic001G059700--Sobic003G053400 Sobic004G297900 Sobic004G297900 Sobic001G059700--Sobic004G297900 Sobic008G005100 Sobic008G005100 Sobic001G059700--Sobic008G005100 Sobic003G053400--Sobic002G261500 Sobic003G053400--Sobic009G088900 Sobic002G425000 Sobic002G425000 Sobic003G053400--Sobic002G425000 Sobic002G124500 Sobic002G124500 Sobic003G053400--Sobic002G124500 Sobic003G053400--Sobic009G109000 Sobic010G212500 Sobic010G212500 Sobic003G053400--Sobic010G212500 Sobic003G053400--Sobic004G297900 Sobic002G365550 Sobic002G365550 Sobic003G053400--Sobic002G365550 Sobic003G053400--Sobic002G365801 Sobic005G061200--Sobic009G088900 Sobic005G061200--Sobic007G176000 Sobic005G061200--Sobic002G154600 Sobic001G261460 Sobic001G261460 Sobic005G061200--Sobic001G261460 Sobic005G061200--Sobic001G514200 Sobic005G061200--Sobic007G218800 Sobic005G061200--Sobic008G055100 Sobic005G061200--Sobic007G178900 Sobic005G061200--Sobic002G261500 Sobic002G365801--Sobic002G365550 Sobic004G071000 Sobic004G071000 Sobic002G365801--Sobic004G071000 Sobic010G115700 Sobic010G115700 Sobic002G365801--Sobic010G115700 Sobic002G365801--Sobic010G212500 Sobic002G365801--Sobic002G368300 Sobic002G365500 Sobic002G365500 Sobic002G365801--Sobic002G365500 Sobic002G365801--Sobic010G096400 Sobic001G379400 Sobic001G379400 Sobic002G365801--Sobic001G379400 Sobic002G365801--Sobic009G088900 Sobic002G154600--Sobic007G218800 Sobic002G154600--Sobic002G261500 Sobic001G430100 Sobic001G430100 Sobic002G154600--Sobic001G430100 Sobic002G154600--Sobic009G088900 Sobic002G154600--Sobic008G055100 Sobic002G183700 Sobic002G183700 Sobic002G154600--Sobic002G183700 Sobic003G311800 Sobic003G311800 Sobic002G154600--Sobic003G311800 Sobic002G154600--Sobic004G297900 Sobic003G121100 Sobic003G121100 Sobic002G154600--Sobic003G121100 Sobic007G218800--Sobic008G055100 Sobic007G218800--Sobic002G154600 Sobic007G218800--Sobic007G176000 Sobic010G252500 Sobic010G252500 Sobic007G218800--Sobic010G252500 Sobic007G218800--Sobic009G088900 Sobic007G218800--Sobic003G311800 Sobic007G218800--Sobic001G430100 Sobic007G218800--Sobic001G049900 Sobic007G218800--Sobic010G085800 Sobic001G238300 Sobic001G238300 Sobic002G261500--Sobic001G238300 Sobic002G261500--Sobic002G425000 Sobic002G261500--Sobic004G297900 Sobic002G261500--Sobic010G212500 Sobic002G042200 Sobic002G042200 Sobic002G261500--Sobic002G042200 Sobic002G261500--Sobic003G053400 Sobic007G050200 Sobic007G050200 Sobic002G261500--Sobic007G050200 Sobic002G261500--Sobic001G379400 Sobic006G260200 Sobic006G260200 Sobic002G261500--Sobic006G260200 Sobic002G368300--Sobic002G365801 Sobic002G368300--Sobic007G178900 Sobic002G368300--Sobic004G071000 Sobic002G368300--Sobic002G365500 Sobic002G368300--Sobic002G365550 Sobic002G368300--Sobic010G096400 Sobic002G368300--Sobic009G088900 Sobic002G368300--Sobic010G212500 Sobic002G368300--Sobic007G176000
Octagon: transcription factors


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