Gene annotation
Transcriptome id Sobic.008G055100.1
Synonym Sb08g004670
Functional annotation dirigent, putative, expressed
UniProt C5YSR4
Pfam PF03018
Panther DB PTHR21495 PTHR21495:SF75
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G58170 : Disease resistance-responsive (dirigent-like protein) family protein
RAP-DB (Rice) LOC_Os12g07580.1 : dirigent, putative, expressed
MaizeGDB (Corn) Zm00025a054056 , Zm00025a054055
Brachypodium KQJ92032
Barley HORVU5Hr1G094740.1 , HORVU5Hr1G094740.3 , HORVU5Hr1G094740.2 , HORVU5Hr1G094700.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G088900 membrane associated DUF588 domain containing protein, putative, expressed -
2 Sobic.001G514200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
3 Sobic.009G109000 expressed protein -
4 Sobic.007G218800 "caffeoylCoA O-methyltransferase, the MYB transcription factor binding domain AACG element"(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ (54% identity with SbCCoAOMT/70.9% similarity)(PubMedID : 27457122)@Functions are not investigated(PubMedID : 29721721)@caffeoyl-CoA O-methyltransferase, putative, expressed K18883: tricin synthase
5 Sobic.010G096400 proteins of unknown function domain containing protein, expressed -
6 Sobic.001G049900 UDP-rhamnose rhamnosyltransferase, putative, expressed -
7 Sobic.007G176000 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
8 Sobic.007G178900 CXE carboxylesterase, putative, expressed -
9 Sobic.002G154600 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
10 Sobic.001G310300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
11 Sobic.004G071000 "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
12 Sobic.002G368300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@COBRA-like protein precursor, putative, expressed -
13 Sobic.002G365801 - -
14 Sobic.002G001700 ZOS7-01 - C2H2 zinc finger protein, expressed -
15 Sobic.002G365550 - -
16 Sobic.004G139300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 71D10, putative, expressed -
17 Sobic.005G061200 dirigent, putative, expressed -
18 Sobic.001G430100 - -
19 Sobic.010G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.008G102800 expressed protein -


Gene co-expression network
sample Sobic008G055100 Sobic008G055100 Sobic009G088900 Sobic009G088900 Sobic008G055100--Sobic009G088900 Sobic001G514200 Sobic001G514200 Sobic008G055100--Sobic001G514200 Sobic009G109000 Sobic009G109000 Sobic008G055100--Sobic009G109000 Sobic007G218800 Sobic007G218800 Sobic008G055100--Sobic007G218800 Sobic010G096400 Sobic010G096400 Sobic008G055100--Sobic010G096400 Sobic001G049900 Sobic001G049900 Sobic008G055100--Sobic001G049900 Sobic007G176000 Sobic007G176000 Sobic008G055100--Sobic007G176000 Sobic007G178900 Sobic007G178900 Sobic008G055100--Sobic007G178900 Sobic002G154600 Sobic002G154600 Sobic008G055100--Sobic002G154600 Sobic009G088900--Sobic008G055100 Sobic001G059700 Sobic001G059700 Sobic009G088900--Sobic001G059700 Sobic003G053400 Sobic003G053400 Sobic009G088900--Sobic003G053400 Sobic005G061200 Sobic005G061200 Sobic009G088900--Sobic005G061200 Sobic002G365801 Sobic002G365801 Sobic009G088900--Sobic002G365801 Sobic009G088900--Sobic002G154600 Sobic009G088900--Sobic007G218800 Sobic002G261500 Sobic002G261500 Sobic009G088900--Sobic002G261500 Sobic002G368300 Sobic002G368300 Sobic009G088900--Sobic002G368300 Sobic001G514200--Sobic008G055100 Sobic010G047600 Sobic010G047600 Sobic001G514200--Sobic010G047600 Sobic001G261460 Sobic001G261460 Sobic001G514200--Sobic001G261460 Sobic001G310300 Sobic001G310300 Sobic001G514200--Sobic001G310300 Sobic010G138300 Sobic010G138300 Sobic001G514200--Sobic010G138300 Sobic009G221800 Sobic009G221800 Sobic001G514200--Sobic009G221800 Sobic001G514200--Sobic005G061200 Sobic001G514200--Sobic007G176000 Sobic001G514200--Sobic002G154600 Sobic003G311800 Sobic003G311800 Sobic009G109000--Sobic003G311800 Sobic004G297900 Sobic004G297900 Sobic009G109000--Sobic004G297900 Sobic009G109000--Sobic001G049900 Sobic009G109000--Sobic008G055100 Sobic009G109000--Sobic003G053400 Sobic003G411200 Sobic003G411200 Sobic009G109000--Sobic003G411200 Sobic004G348800 Sobic004G348800 Sobic009G109000--Sobic004G348800 Sobic008G009400 Sobic008G009400 Sobic009G109000--Sobic008G009400 Sobic001G430100 Sobic001G430100 Sobic009G109000--Sobic001G430100 Sobic007G218800--Sobic008G055100 Sobic007G218800--Sobic002G154600 Sobic007G218800--Sobic007G176000 Sobic010G252500 Sobic010G252500 Sobic007G218800--Sobic010G252500 Sobic007G218800--Sobic009G088900 Sobic007G218800--Sobic003G311800 Sobic007G218800--Sobic001G430100 Sobic007G218800--Sobic001G049900 Sobic010G085800 Sobic010G085800 Sobic007G218800--Sobic010G085800 Sobic010G096400--Sobic008G055100 Sobic004G139300 Sobic004G139300 Sobic010G096400--Sobic004G139300 Sobic002G365550 Sobic002G365550 Sobic010G096400--Sobic002G365550 Sobic010G096400--Sobic002G365801 Sobic009G088500 Sobic009G088500 Sobic010G096400--Sobic009G088500 Sobic002G216100 Sobic002G216100 Sobic010G096400--Sobic002G216100 Sobic001G360500 Sobic001G360500 Sobic010G096400--Sobic001G360500 Sobic010G096400--Sobic002G368300 Sobic010G096400--Sobic007G176000 Sobic001G049900--Sobic003G311800 Sobic002G003800 Sobic002G003800 Sobic001G049900--Sobic002G003800 Sobic010G184800 Sobic010G184800 Sobic001G049900--Sobic010G184800 Sobic001G049900--Sobic009G109000 Sobic001G049900--Sobic001G430100 Sobic006G197100 Sobic006G197100 Sobic001G049900--Sobic006G197100 Sobic001G049900--Sobic008G055100 Sobic004G042000 Sobic004G042000 Sobic001G049900--Sobic004G042000 Sobic004G310200 Sobic004G310200 Sobic001G049900--Sobic004G310200 Sobic007G176100 Sobic007G176100 Sobic007G176000--Sobic007G176100 Sobic007G176000--Sobic007G178900 Sobic007G030501 Sobic007G030501 Sobic007G176000--Sobic007G030501 Sobic007G176000--Sobic002G216100 Sobic007G176000--Sobic006G197100 Sobic007G176000--Sobic005G061200 Sobic002G185800 Sobic002G185800 Sobic007G176000--Sobic002G185800 Sobic007G176000--Sobic004G139300 Sobic007G176000--Sobic008G055100 Sobic007G178900--Sobic007G176000 Sobic007G178900--Sobic002G216100 Sobic007G178900--Sobic004G139300 Sobic007G178900--Sobic002G185800 Sobic005G046700 Sobic005G046700 Sobic007G178900--Sobic005G046700 Sobic007G178900--Sobic002G368300 Sobic007G178900--Sobic006G197100 Sobic007G178900--Sobic008G055100 Sobic007G178900--Sobic007G176100 Sobic002G154600--Sobic007G218800 Sobic002G154600--Sobic002G261500 Sobic002G154600--Sobic001G430100 Sobic002G154600--Sobic009G088900 Sobic002G154600--Sobic008G055100 Sobic002G183700 Sobic002G183700 Sobic002G154600--Sobic002G183700 Sobic002G154600--Sobic003G311800 Sobic002G154600--Sobic004G297900 Sobic003G121100 Sobic003G121100 Sobic002G154600--Sobic003G121100
Octagon: transcription factors


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