Gene annotation
Transcriptome id Sobic.001G049900.2
Synonym Sb01g004570
Functional annotation UDP-rhamnose rhamnosyltransferase, putative, expressed
UniProt A0A1Z5S4C2
Pfam PF00201
Panther DB PTHR11926 PTHR11926:SF321
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016758; transferase activity, transferring hexosyl groups GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT5G65550 : UDP-Glycosyltransferase superfamily protein
RAP-DB (Rice) LOC_Os03g59030.1 : UDP-rhamnose rhamnosyltransferase, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK07315 , KQK12610
Barley HORVU5Hr1G094450.2
Wheat TraesCSU02G063100 , TraesCS1A02G323100 , TraesCS7D02G081000 , TraesCS5D02G464600 , TraesCS5A02G453800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G311800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@xylosyltransferase, putative, expressed -
2 Sobic.002G003800 plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.010G184800 heme oxygenase 1, putative, expressed K00510: heme oxygenase 1
4 Sobic.009G109000 expressed protein -
5 Sobic.001G430100 - -
6 Sobic.006G197100 DNA binding protein, putative, expressed -
7 Sobic.008G055100 dirigent, putative, expressed -
8 Sobic.004G042000 apoptosis-inducing factor 2, putative, expressed -
9 Sobic.004G310200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@receptor-like protein kinase like protein, putative, expressed -
10 Sobic.004G297900 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.002G213600 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR38 - Auxin-responsive SAUR gene family member, expressed K14488: SAUR family protein
12 Sobic.003G411200 CRAL/TRIO domain containing protein, expressed -
13 Sobic.001G304100 LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
14 Sobic.003G119500 expressed protein -
15 Sobic.009G088900 membrane associated DUF588 domain containing protein, putative, expressed -
16 Sobic.001G304201 - -
17 Sobic.010G029700 tentative name(PubMedID : 31536532)@oxidoreductase, putative, expressed -
18 Sobic.002G001700 ZOS7-01 - C2H2 zinc finger protein, expressed -
19 Sobic.001G302600 LTPL147 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.010G008400 bark storage protein A precursor, putative, expressed -


Gene co-expression network
sample Sobic001G049900 Sobic001G049900 Sobic003G311800 Sobic003G311800 Sobic001G049900--Sobic003G311800 Sobic002G003800 Sobic002G003800 Sobic001G049900--Sobic002G003800 Sobic010G184800 Sobic010G184800 Sobic001G049900--Sobic010G184800 Sobic009G109000 Sobic009G109000 Sobic001G049900--Sobic009G109000 Sobic001G430100 Sobic001G430100 Sobic001G049900--Sobic001G430100 Sobic006G197100 Sobic006G197100 Sobic001G049900--Sobic006G197100 Sobic008G055100 Sobic008G055100 Sobic001G049900--Sobic008G055100 Sobic004G042000 Sobic004G042000 Sobic001G049900--Sobic004G042000 Sobic004G310200 Sobic004G310200 Sobic001G049900--Sobic004G310200 Sobic004G297900 Sobic004G297900 Sobic003G311800--Sobic004G297900 Sobic003G311800--Sobic002G003800 Sobic003G311800--Sobic001G049900 Sobic003G311800--Sobic009G109000 Sobic003G311800--Sobic006G197100 Sobic006G274933 Sobic006G274933 Sobic003G311800--Sobic006G274933 Sobic002G183700 Sobic002G183700 Sobic003G311800--Sobic002G183700 Sobic007G090469 Sobic007G090469 Sobic003G311800--Sobic007G090469 Sobic003G311800--Sobic004G042000 Sobic002G003800--Sobic006G197100 Sobic002G003800--Sobic004G042000 Sobic002G003800--Sobic003G311800 Sobic001G302600 Sobic001G302600 Sobic002G003800--Sobic001G302600 Sobic002G003800--Sobic001G049900 Sobic001G416200 Sobic001G416200 Sobic002G003800--Sobic001G416200 Sobic002G003800--Sobic004G310200 Sobic003G079400 Sobic003G079400 Sobic002G003800--Sobic003G079400 Sobic001G304100 Sobic001G304100 Sobic002G003800--Sobic001G304100 Sobic010G184800--Sobic001G304100 Sobic009G111000 Sobic009G111000 Sobic010G184800--Sobic009G111000 Sobic010G184800--Sobic001G049900 Sobic010G029700 Sobic010G029700 Sobic010G184800--Sobic010G029700 Sobic008G186100 Sobic008G186100 Sobic010G184800--Sobic008G186100 Sobic001G231700 Sobic001G231700 Sobic010G184800--Sobic001G231700 Sobic002G176100 Sobic002G176100 Sobic010G184800--Sobic002G176100 Sobic004G046200 Sobic004G046200 Sobic010G184800--Sobic004G046200 Sobic006G234800 Sobic006G234800 Sobic010G184800--Sobic006G234800 Sobic009G109000--Sobic003G311800 Sobic009G109000--Sobic004G297900 Sobic009G109000--Sobic001G049900 Sobic009G109000--Sobic008G055100 Sobic003G053400 Sobic003G053400 Sobic009G109000--Sobic003G053400 Sobic003G411200 Sobic003G411200 Sobic009G109000--Sobic003G411200 Sobic004G348800 Sobic004G348800 Sobic009G109000--Sobic004G348800 Sobic008G009400 Sobic008G009400 Sobic009G109000--Sobic008G009400 Sobic009G109000--Sobic001G430100 Sobic001G430100--Sobic002G183700 Sobic001G430100--Sobic003G311800 Sobic007G050200 Sobic007G050200 Sobic001G430100--Sobic007G050200 Sobic001G430100--Sobic001G049900 Sobic002G001700 Sobic002G001700 Sobic001G430100--Sobic002G001700 Sobic001G430100--Sobic004G348800 Sobic001G430100--Sobic004G297900 Sobic001G430100--Sobic006G197100 Sobic001G430100--Sobic009G109000 Sobic006G197100--Sobic002G003800 Sobic006G197100--Sobic004G042000 Sobic004G349125 Sobic004G349125 Sobic006G197100--Sobic004G349125 Sobic006G197100--Sobic001G416200 Sobic004G202400 Sobic004G202400 Sobic006G197100--Sobic004G202400 Sobic001G264000 Sobic001G264000 Sobic006G197100--Sobic001G264000 Sobic006G197100--Sobic003G311800 Sobic002G042200 Sobic002G042200 Sobic006G197100--Sobic002G042200 Sobic003G368600 Sobic003G368600 Sobic006G197100--Sobic003G368600 Sobic009G088900 Sobic009G088900 Sobic008G055100--Sobic009G088900 Sobic001G514200 Sobic001G514200 Sobic008G055100--Sobic001G514200 Sobic008G055100--Sobic009G109000 Sobic007G218800 Sobic007G218800 Sobic008G055100--Sobic007G218800 Sobic010G096400 Sobic010G096400 Sobic008G055100--Sobic010G096400 Sobic008G055100--Sobic001G049900 Sobic007G176000 Sobic007G176000 Sobic008G055100--Sobic007G176000 Sobic007G178900 Sobic007G178900 Sobic008G055100--Sobic007G178900 Sobic002G154600 Sobic002G154600 Sobic008G055100--Sobic002G154600 Sobic004G042000--Sobic006G197100 Sobic004G042000--Sobic002G003800 Sobic004G042000--Sobic004G349125 Sobic004G042000--Sobic001G416200 Sobic002G213600 Sobic002G213600 Sobic004G042000--Sobic002G213600 Sobic004G042000--Sobic001G302600 Sobic004G042000--Sobic003G311800 Sobic001G304201 Sobic001G304201 Sobic004G042000--Sobic001G304201 Sobic004G042000--Sobic001G264000 Sobic004G310200--Sobic002G003800 Sobic004G310200--Sobic003G311800 Sobic004G310200--Sobic004G042000 Sobic004G310200--Sobic001G304100 Sobic004G310200--Sobic001G049900 Sobic001G500000 Sobic001G500000 Sobic004G310200--Sobic001G500000 Sobic010G252401 Sobic010G252401 Sobic004G310200--Sobic010G252401 Sobic004G310200--Sobic002G213600 Sobic003G084400 Sobic003G084400 Sobic004G310200--Sobic003G084400
Octagon: transcription factors


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