Gene annotation
Transcriptome id Sobic.002G368300.1
Synonym COBL4, Sb02g038740, IRX6
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence (PubMedID : 27586543)
COBRA-like protein precursor, putative, expressed
UniProt C5XDW2
Pfam PF04833
Panther DB PTHR31673 PTHR31673:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016049; cell growth GO:0010215cellulose microfibril organization


Orthologs (automatic annotation)
TAIR AT5G15630 : COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
RAP-DB (Rice) LOC_Os07g41320.1 : COBRA-like protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a015499 , Zm00025a052182 , Zm00025a048697
Brachypodium KQK15342 , KQK15343 , KQK21273 , PNT74793 , PNT74792
Barley HORVU2Hr1G033080.1 , HORVU2Hr1G033060.16 , HORVU2Hr1G033060.14 , HORVU2Hr1G033060.15 , HORVU2Hr1G033060.12 , HORVU2Hr1G033060.13 , HORVU2Hr1G033060.10 , HORVU2Hr1G033060.11 , HORVU2Hr1G033060.8 , HORVU2Hr1G033060.9 , HORVU2Hr1G033060.4 , HORVU0Hr1G004650.6 , HORVU2Hr1G033060.6 , HORVU0Hr1G004650.4 , HORVU0Hr1G004650.3 , HORVU0Hr1G004650.2 , HORVU0Hr1G004650.1 , HORVU2Hr1G033060.3 , HORVU3Hr1G007580.9 , HORVU3Hr1G007580.8 , HORVU3Hr1G007580.1 , HORVU3Hr1G007580.3 , HORVU3Hr1G007580.2 , HORVU3Hr1G007580.5 , HORVU3Hr1G007580.4 , HORVU3Hr1G007580.7 , HORVU3Hr1G007580.6 , HORVU3Hr1G009960.1 , HORVU2Hr1G033060.7 , HORVU2Hr1G033060.5 , HORVU0Hr1G004650.5 , HORVU2Hr1G033060.1 , HORVU2Hr1G033060.2
Wheat TraesCS2B02G201400 , TraesCS2A02G175000 , TraesCS2D02G182400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G365801 - -
2 Sobic.007G178900 CXE carboxylesterase, putative, expressed -
3 Sobic.004G071000 "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
4 Sobic.002G365500 igA FC receptor precursor, putative, expressed -
5 Sobic.002G365550 - -
6 Sobic.010G096400 proteins of unknown function domain containing protein, expressed -
7 Sobic.009G088900 membrane associated DUF588 domain containing protein, putative, expressed -
8 Sobic.010G212500 - -
9 Sobic.007G176000 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
10 Sobic.008G055100 dirigent, putative, expressed -
11 Sobic.003G053500 hydrolase, alpha/beta fold family protein, putative, expressed -
12 Sobic.006G028400 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
13 Sobic.010G115700 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.002G154600 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
15 Sobic.001G514200 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
16 Sobic.002G216100 cytochrome P450, putative, expressed -
17 Sobic.003G053400 hydrolase, alpha/beta fold family protein, putative, expressed -
18 Sobic.008G016000 major facilitator superfamily antiporter, putative, expressed -
19 Sobic.004G139300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450 71D10, putative, expressed -
20 Sobic.002G365600 igA FC receptor precursor, putative, expressed -


Gene co-expression network
sample Sobic002G368300 Sobic002G368300 Sobic002G365801 Sobic002G365801 Sobic002G368300--Sobic002G365801 Sobic007G178900 Sobic007G178900 Sobic002G368300--Sobic007G178900 Sobic004G071000 Sobic004G071000 Sobic002G368300--Sobic004G071000 Sobic002G365500 Sobic002G365500 Sobic002G368300--Sobic002G365500 Sobic002G365550 Sobic002G365550 Sobic002G368300--Sobic002G365550 Sobic010G096400 Sobic010G096400 Sobic002G368300--Sobic010G096400 Sobic009G088900 Sobic009G088900 Sobic002G368300--Sobic009G088900 Sobic010G212500 Sobic010G212500 Sobic002G368300--Sobic010G212500 Sobic007G176000 Sobic007G176000 Sobic002G368300--Sobic007G176000 Sobic002G365801--Sobic002G365550 Sobic002G365801--Sobic004G071000 Sobic010G115700 Sobic010G115700 Sobic002G365801--Sobic010G115700 Sobic002G365801--Sobic010G212500 Sobic002G365801--Sobic002G368300 Sobic002G365801--Sobic002G365500 Sobic002G365801--Sobic010G096400 Sobic001G379400 Sobic001G379400 Sobic002G365801--Sobic001G379400 Sobic002G365801--Sobic009G088900 Sobic007G178900--Sobic007G176000 Sobic002G216100 Sobic002G216100 Sobic007G178900--Sobic002G216100 Sobic004G139300 Sobic004G139300 Sobic007G178900--Sobic004G139300 Sobic002G185800 Sobic002G185800 Sobic007G178900--Sobic002G185800 Sobic005G046700 Sobic005G046700 Sobic007G178900--Sobic005G046700 Sobic007G178900--Sobic002G368300 Sobic006G197100 Sobic006G197100 Sobic007G178900--Sobic006G197100 Sobic008G055100 Sobic008G055100 Sobic007G178900--Sobic008G055100 Sobic007G176100 Sobic007G176100 Sobic007G178900--Sobic007G176100 Sobic004G071000--Sobic002G365801 Sobic004G071000--Sobic002G365550 Sobic004G071000--Sobic002G368300 Sobic004G071000--Sobic002G365500 Sobic004G071000--Sobic008G055100 Sobic004G071000--Sobic010G115700 Sobic004G071000--Sobic010G212500 Sobic002G365600 Sobic002G365600 Sobic004G071000--Sobic002G365600 Sobic003G053400 Sobic003G053400 Sobic004G071000--Sobic003G053400 Sobic002G365500--Sobic002G365550 Sobic002G365500--Sobic002G365600 Sobic002G365500--Sobic010G115700 Sobic002G365500--Sobic002G365801 Sobic002G365500--Sobic004G071000 Sobic002G365500--Sobic002G368300 Sobic006G183900 Sobic006G183900 Sobic002G365500--Sobic006G183900 Sobic006G028400 Sobic006G028400 Sobic002G365500--Sobic006G028400 Sobic003G269500 Sobic003G269500 Sobic002G365500--Sobic003G269500 Sobic002G365550--Sobic002G365801 Sobic002G365550--Sobic002G365600 Sobic002G365550--Sobic002G365500 Sobic002G365550--Sobic004G071000 Sobic002G365550--Sobic010G115700 Sobic002G365550--Sobic010G212500 Sobic002G365550--Sobic010G096400 Sobic002G365550--Sobic002G368300 Sobic002G365550--Sobic003G053400 Sobic010G096400--Sobic008G055100 Sobic010G096400--Sobic004G139300 Sobic010G096400--Sobic002G365550 Sobic010G096400--Sobic002G365801 Sobic009G088500 Sobic009G088500 Sobic010G096400--Sobic009G088500 Sobic010G096400--Sobic002G216100 Sobic001G360500 Sobic001G360500 Sobic010G096400--Sobic001G360500 Sobic010G096400--Sobic002G368300 Sobic010G096400--Sobic007G176000 Sobic009G088900--Sobic008G055100 Sobic001G059700 Sobic001G059700 Sobic009G088900--Sobic001G059700 Sobic009G088900--Sobic003G053400 Sobic005G061200 Sobic005G061200 Sobic009G088900--Sobic005G061200 Sobic009G088900--Sobic002G365801 Sobic002G154600 Sobic002G154600 Sobic009G088900--Sobic002G154600 Sobic007G218800 Sobic007G218800 Sobic009G088900--Sobic007G218800 Sobic002G261500 Sobic002G261500 Sobic009G088900--Sobic002G261500 Sobic009G088900--Sobic002G368300 Sobic010G212500--Sobic002G261500 Sobic004G348800 Sobic004G348800 Sobic010G212500--Sobic004G348800 Sobic010G212500--Sobic002G365801 Sobic010G212500--Sobic002G365550 Sobic001G395800 Sobic001G395800 Sobic010G212500--Sobic001G395800 Sobic003G119500 Sobic003G119500 Sobic010G212500--Sobic003G119500 Sobic010G212500--Sobic003G053400 Sobic003G311800 Sobic003G311800 Sobic010G212500--Sobic003G311800 Sobic009G109000 Sobic009G109000 Sobic010G212500--Sobic009G109000 Sobic007G176000--Sobic007G176100 Sobic007G176000--Sobic007G178900 Sobic007G030501 Sobic007G030501 Sobic007G176000--Sobic007G030501 Sobic007G176000--Sobic002G216100 Sobic007G176000--Sobic006G197100 Sobic007G176000--Sobic005G061200 Sobic007G176000--Sobic002G185800 Sobic007G176000--Sobic004G139300 Sobic007G176000--Sobic008G055100
Octagon: transcription factors


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