Gene annotation
Transcriptome id Sobic.003G053500.1
Synonym Sb03g004620
Functional annotation hydrolase, alpha/beta fold family protein, putative, expressed
UniProt C5XNH2
Pfam PF12697
Panther DB PTHR10992 PTHR10992:SF858
NCBI CDD KOG1454; Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G21950 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g07420.1 : hydrolase, alpha/beta fold family protein, putative, expressed
MaizeGDB (Corn) Zm00025a023291 , Zm00025a035707 , Zm00025a023289
Brachypodium -
Barley HORVU3Hr1G017100.3 , HORVU3Hr1G017100.1 , HORVU3Hr1G017100.2 , HORVU3Hr1G017100.4
Wheat TraesCS3B02G110600 , TraesCS3A02G095100 , TraesCS3D02G095300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G368300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@COBRA-like protein precursor, putative, expressed -
2 Sobic.010G115600 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
3 Sobic.001G002800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
4 Sobic.007G090472 - -
5 Sobic.006G183900 cytochrome P450, putative, expressed -
6 Sobic.002G365500 igA FC receptor precursor, putative, expressed -
7 Sobic.003G287200 WRKY23, expressed -
8 Sobic.006G028400 1-aminocyclopropane-1-carboxylate oxidase homolog 2, putative, expressed -
9 Sobic.007G170300 beta,beta-carotene 9,10-dioxygenase, putative, expressed K17913: carlactone synthase / all-trans-10'-apo-beta-carotenal 13,14-cleaving dioxygenase
10 Sobic.002G365801 - -
11 Sobic.007G109600 expressed protein -
12 Sobic.001G351500 ICE-like protease p20 domain containing protein, putative, expressed -
13 Sobic.004G071000 "affects cinnamyl alcohol dehydrogenase (CAD) activity, resulting in altered lignin composition"(PubMedID : 20585750)@the MYB transcription factor binding domain AACG element(PubMedID : 24045932)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@"cinnamyl alcohol dehydrogenase, CAD2"(PubMedID : 19087955)@Brown midrib6 Gene(PubMedID : 19087955)@cinnamyl alcohol dehydrogenase(PubMedID : 19363091)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@"cinnamyl alcohol dehydrogenase 2, CAD2. homolog in maize Bm1."(PubMedID : 9675900)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
14 Sobic.001G360500 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.008G016000 major facilitator superfamily antiporter, putative, expressed -
16 Sobic.002G254900 membrane protein, putative, expressed -
17 Sobic.007G073000 - -
18 Sobic.002G365550 - -
19 Sobic.002G101400 erythronate-4-phosphate dehydrogenase domain containing protein, expressed -
20 Sobic.002G337100 nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3


Gene co-expression network
sample Sobic003G053500 Sobic003G053500 Sobic002G368300 Sobic002G368300 Sobic003G053500--Sobic002G368300 Sobic010G115600 Sobic010G115600 Sobic003G053500--Sobic010G115600 Sobic001G002800 Sobic001G002800 Sobic003G053500--Sobic001G002800 Sobic007G090472 Sobic007G090472 Sobic003G053500--Sobic007G090472 Sobic006G183900 Sobic006G183900 Sobic003G053500--Sobic006G183900 Sobic002G365500 Sobic002G365500 Sobic003G053500--Sobic002G365500 Sobic003G287200 Sobic003G287200 Sobic003G053500--Sobic003G287200 Sobic006G028400 Sobic006G028400 Sobic003G053500--Sobic006G028400 Sobic007G170300 Sobic007G170300 Sobic003G053500--Sobic007G170300 Sobic002G365801 Sobic002G365801 Sobic002G368300--Sobic002G365801 Sobic007G178900 Sobic007G178900 Sobic002G368300--Sobic007G178900 Sobic004G071000 Sobic004G071000 Sobic002G368300--Sobic004G071000 Sobic002G368300--Sobic002G365500 Sobic002G365550 Sobic002G365550 Sobic002G368300--Sobic002G365550 Sobic010G096400 Sobic010G096400 Sobic002G368300--Sobic010G096400 Sobic009G088900 Sobic009G088900 Sobic002G368300--Sobic009G088900 Sobic010G212500 Sobic010G212500 Sobic002G368300--Sobic010G212500 Sobic007G176000 Sobic007G176000 Sobic002G368300--Sobic007G176000 Sobic010G115600--Sobic001G002800 Sobic010G115600--Sobic003G053500 Sobic010G115600--Sobic007G090472 Sobic010G028100 Sobic010G028100 Sobic010G115600--Sobic010G028100 Sobic002G146000 Sobic002G146000 Sobic010G115600--Sobic002G146000 Sobic007G073000 Sobic007G073000 Sobic010G115600--Sobic007G073000 Sobic001G514700 Sobic001G514700 Sobic010G115600--Sobic001G514700 Sobic001G360500 Sobic001G360500 Sobic010G115600--Sobic001G360500 Sobic003G266300 Sobic003G266300 Sobic010G115600--Sobic003G266300 Sobic002G254900 Sobic002G254900 Sobic001G002800--Sobic002G254900 Sobic001G503000 Sobic001G503000 Sobic001G002800--Sobic001G503000 Sobic001G002800--Sobic007G090472 Sobic001G002800--Sobic003G287200 Sobic005G107500 Sobic005G107500 Sobic001G002800--Sobic005G107500 Sobic006G209000 Sobic006G209000 Sobic001G002800--Sobic006G209000 Sobic010G096700 Sobic010G096700 Sobic001G002800--Sobic010G096700 Sobic001G002800--Sobic007G073000 Sobic001G506600 Sobic001G506600 Sobic001G002800--Sobic001G506600 Sobic007G090472--Sobic010G028100 Sobic007G090472--Sobic007G073000 Sobic007G090472--Sobic001G360500 Sobic010G082000 Sobic010G082000 Sobic007G090472--Sobic010G082000 Sobic006G092700 Sobic006G092700 Sobic007G090472--Sobic006G092700 Sobic006G135300 Sobic006G135300 Sobic007G090472--Sobic006G135300 Sobic006G229100 Sobic006G229100 Sobic007G090472--Sobic006G229100 Sobic007G090472--Sobic001G503000 Sobic003G215300 Sobic003G215300 Sobic007G090472--Sobic003G215300 Sobic006G183900--Sobic003G287200 Sobic007G109600 Sobic007G109600 Sobic006G183900--Sobic007G109600 Sobic006G183900--Sobic006G028400 Sobic006G183900--Sobic007G090472 Sobic008G034700 Sobic008G034700 Sobic006G183900--Sobic008G034700 Sobic004G248500 Sobic004G248500 Sobic006G183900--Sobic004G248500 Sobic006G183900--Sobic007G170300 Sobic002G365600 Sobic002G365600 Sobic006G183900--Sobic002G365600 Sobic006G183900--Sobic002G365500 Sobic002G365500--Sobic002G365550 Sobic002G365500--Sobic002G365600 Sobic010G115700 Sobic010G115700 Sobic002G365500--Sobic010G115700 Sobic002G365500--Sobic002G365801 Sobic002G365500--Sobic004G071000 Sobic002G365500--Sobic002G368300 Sobic002G365500--Sobic006G183900 Sobic002G365500--Sobic006G028400 Sobic003G269500 Sobic003G269500 Sobic002G365500--Sobic003G269500 Sobic003G287200--Sobic006G183900 Sobic003G287200--Sobic006G229100 Sobic003G287200--Sobic001G002800 Sobic003G287200--Sobic001G360500 Sobic003G287200--Sobic001G503000 Sobic003G287200--Sobic007G090472 Sobic003G287200--Sobic010G096700 Sobic003G287200--Sobic007G170300 Sobic006G117500 Sobic006G117500 Sobic003G287200--Sobic006G117500 Sobic006G028400--Sobic006G183900 Sobic003G203600 Sobic003G203600 Sobic006G028400--Sobic003G203600 Sobic006G028400--Sobic007G170300 Sobic006G028400--Sobic007G109600 Sobic006G028400--Sobic007G178900 Sobic002G185800 Sobic002G185800 Sobic006G028400--Sobic002G185800 Sobic006G028400--Sobic002G365500 Sobic006G028400--Sobic004G071000 Sobic006G028400--Sobic002G365550 Sobic007G015200 Sobic007G015200 Sobic007G170300--Sobic007G015200 Sobic002G101400 Sobic002G101400 Sobic007G170300--Sobic002G101400 Sobic005G046700 Sobic005G046700 Sobic007G170300--Sobic005G046700 Sobic007G170300--Sobic003G203600 Sobic007G170300--Sobic006G028400 Sobic007G170300--Sobic006G183900 Sobic007G170300--Sobic007G073000 Sobic007G170300--Sobic002G185800 Sobic007G170300--Sobic003G287200
Octagon: transcription factors


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